CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Trichodesmium erythraeum IMS101 (NC_008312 7750109 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 559     Density of SSR      : 1SSR/ 13.81 kb   Average length of SSR  : 13.7 bp
Coding      : 257     Non-Coding           : 291   Coding and Non-Coding : 13
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 10 198 275 23 48 559
IMPERFECT 63 515 3565 3024 372 357 7896
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATCAAG)3189440594422Coding
2. (ATCATG)318695483695500Coding
3. (AGGTAA)318794218794235Coding
4. (GTTGAG)318969820969837Coding
5. (GTTGAG)31810709841071001Coding
6. (AAGTCC)31814577301457747Coding
7. (TTACCA)106016847891684848Coding
8. (TAAGTC)31817039051703922Coding
9. (CAACTA)31824389722438989Coding
10. (TGATAT)31824730872473104Coding
11. (ATTTTC)31825541782554195Coding
12. (TTTTTC)31826469942647011Coding
13. (CCTCAA)31827012032701220Coding
14. (CCTCAA)31827043802704397Coding
15. (AAAACT)63627878092787844Non coding
16. (ATTAAC)31828605052860522Non coding
17. (TTAAGG)31829813482981365Non coding
18. (GGAATA)31830766053076622Coding
19. (GGACTT)53030872403087269Coding
20. (TTGGAC)31830872983087315Coding
21. (ATATAA)31832557933255810Coding
22. (AAGAAA)31833290103329027Coding
23. (CACCAG)31839970043997021Coding
24. (CAACAC)63640066764006711Coding
25. (CAACAC)53040067184006747Coding
26. (TTATCA)31842925604292577Coding
27. (ACCATT)31842966914296708Coding
28. (GTTGCT)31846656874665704Coding
29. (AAAAAT)31847015264701543Non coding
30. (CAGAAC)42452185885218611Coding
31. (TGTCTT)31852982355298252Coding
32. (AAGGCG)42453683125368335Coding
33. (AGCCGT)116656288895628954Coding
34. (AGCCGT)74256289735629014Coding
35. (AGCCGT)53056290515629080Coding
36. (TTTTTC)31859019385901955Coding
37. (CTATTC)31859099485909965Coding
38. (CTATTC)31859102125910229Coding
39. (TTTCTA)31859239645923981Coding
40. (TAAAAA)42464297896429812Non coding
41. (TAAAAA)31864305616430578Non coding
42. (GGTGTT)42464629466462969Coding
43. (TTGTTT)53068921606892189Coding
44. (ATATAG)31869021266902143Non coding
45. (GTTGAG)31869372126937229Coding
46. (GTTGAG)31869411356941152Coding
47. (GACCAT)42475436867543709Coding
48. (TTTTCC)31876929977693014Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.