CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Trichodesmium erythraeum IMS101 (NC_008312 7750109 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 559     Density of SSR      : 1SSR/ 13.81 kb   Average length of SSR  : 13.7 bp
Coding      : 257     Non-Coding           : 291   Coding and Non-Coding : 13
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 10 198 275 23 48 559
IMPERFECT 63 515 3565 3024 372 357 7896
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTTAA)3152792827942Non coding
2. (AAAAT)315156767156781Coding
3. (TATTT)31514743181474332Non coding
4. (TAATA)31514781031478117Non coding
5. (TAATT)31517746131774627Non coding
6. (TTTAT)31517953501795364Non coding
7. (CTTTC)31521766022176616Non coding
8. (TATTA)31530802913080305Non coding
9. (AAATA)31531291763129190Non coding
10. (AGATT)31532717593271773Non coding
11. (AATTA)31535790253579039Non coding
12. (TTCTT)31536925503692564Coding
13. (ACGGA)63040713874071416Non coding
14. (ACATT)31545012144501228Non coding
15. (TTTAT)31545919814591995Coding-Non coding
16. (TTAAT)31551931345193148Non coding
17. (TTTCC)31553673785367392Coding
18. (CCTTT)31553673975367411Coding
19. (TTTTA)31554056035405617Non coding
20. (AACTG)31554222875422301Non coding
21. (TTTTA)31566416766641690Coding-Non coding
22. (TCCTT)31570501747050188Non coding
23. (ATTAT)31573676497367663Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.