CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Trichodesmium erythraeum IMS101 (NC_008312 7750109 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 559     Density of SSR      : 1SSR/ 13.81 kb   Average length of SSR  : 13.7 bp
Coding      : 257     Non-Coding           : 291   Coding and Non-Coding : 13
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 10 198 275 23 48 559
IMPERFECT 63 515 3565 3024 372 357 7896
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAT)41254315442Non coding
2. (GAA)6182063620653Coding
3. (TAA)4126369063701Non coding
4. (CAG)4129589395904Coding
5. (AGT)412119474119485Coding
6. (ATT)618163139163156Non coding
7. (GTT)412180731180742Coding
8. (TAT)412187665187676Coding
9. (TTC)412210816210827Coding
10. (TGA)412218142218153Coding
11. (TTA)618234109234126Non coding
12. (GCA)412286082286093Coding
13. (AAT)412347590347601Coding
14. (AAT)412381837381848Non coding
15. (AGA)412495310495321Coding
16. (TAA)412548209548220Coding
17. (TGC)412568230568241Coding
18. (TTC)412649191649202Coding
19. (AAT)412684433684444Coding
20. (TAA)412715847715858Non coding
21. (TGG)412730484730495Coding
22. (TGG)412732591732602Coding
23. (AAC)412753094753105Coding
24. (ACG)412772197772208Coding
25. (CGA)721772753772773Coding
26. (TGG)412776280776291Coding
27. (ACC)412953306953317Coding
28. (AGC)412956525956536Coding
29. (ATG)412972449972460Coding
30. (ATG)412973085973096Coding
31. (CAG)41210526171052628Coding
32. (TAT)41211447071144718Non coding
33. (TAA)41211500441150055Non coding
34. (GAA)41211809221180933Coding
35. (ACT)41212414721241483Coding
36. (TAT)41212454721245483Non coding
37. (ATT)41213200701320081Non coding
38. (TTA)41214025991402610Non coding
39. (TAC)41214075611407572Non coding
40. (TAT)41214834151483426Coding
41. (TTA)41215180291518040Non coding
42. (CCA)51515798711579885Coding
43. (ATT)41216604921660503Non coding
44. (CAG)41216871331687144Coding
45. (ACT)41217191951719206Coding
46. (CAA)41217216601721671Coding
47. (TAT)41217377671737778Non coding
48. (AAC)41217527951752806Coding
49. (CTG)51517825371782551Coding
50. (ACT)41218281771828188Non coding
51. (AAT)41218393351839346Non coding
52. (CAA)41218804961880507Coding
53. (AGC)41220016202001631Coding
54. (TAA)41220048512004862Non coding
55. (ATA)51521209052120919Non coding
56. (ATG)41221494152149426Non coding
57. (AGT)41221840982184109Coding
58. (CAG)41222546732254684Coding
59. (GCA)51523222732322287Coding
60. (CAA)41223578072357818Coding
61. (AGC)41223988482398859Coding
62. (CAC)41224194992419510Coding
63. (TGA)72124439802444000Coding
64. (TTG)41226242532624264Coding
65. (TCA)41226403972640408Coding
66. (TTA)51527209442720958Coding
67. (TTA)51527264882726502Coding
68. (TTA)41227400332740044Non coding
69. (ATC)51527903572790371Coding
70. (CCA)51527965402796554Coding
71. (TCC)41228216032821614Coding
72. (ATC)41228402482840259Coding
73. (TAA)41228525872852598Non coding
74. (ATG)61828549772854994Non coding
75. (TTA)41228596612859672Non coding
76. (GAT)82428831732883196Coding
77. (TGC)41229834272983438Coding
78. (TCA)41230379023037913Non coding
79. (TTA)41231743423174353Coding
80. (CAG)41232271823227193Coding
81. (TAT)41232908243290835Coding
82. (ATA)51533175423317556Non coding
83. (TAA)41233659643365975Non coding
84. (ATT)41233717373371748Coding
85. (AAT)41233946613394672Non coding
86. (TAA)41234188013418812Non coding
87. (CTG)41234235093423520Coding
88. (TAA)41234255233425534Non coding
89. (TTA)41234267473426758Non coding
90. (AAT)41234495543449565Non coding
91. (CTG)41234863023486313Coding
92. (AGC)41235342853534296Coding
93. (TTC)41235696003569611Coding
94. (TAC)61835710793571096Non coding
95. (ATT)41236130523613063Non coding
96. (GGT)61837401393740156Coding
97. (TAT)41238628833862894Non coding
98. (TAA)41239034053903416Non coding
99. (TTA)51539085453908559Coding
100. (CAA)41239582943958305Coding
101. (AAT)41240732424073253Coding
102. (CTT)51540921304092144Coding
103. (TAT)41241641394164150Coding
104. (AAG)41241847864184797Coding
105. (TTA)41242643064264317Non coding
106. (TTG)41243406404340651Coding
107. (TAA)41243440394344050Non coding
108. (TAT)41243452934345304Non coding
109. (TTC)41243516314351642Coding
110. (GAT)41243732244373235Coding
111. (GAT)41243741544374165Coding
112. (ATT)61844181294418146Non coding
113. (TTA)41245983194598330Non coding
114. (CAC)41246580694658080Coding
115. (AGC)41246660764666087Coding
116. (TTC)41246663674666378Coding
117. (TAA)41247342644734275Non coding
118. (CAA)41248115824811593Non coding
119. (TAA)41248199174819928Non coding
120. (TCT)41248281984828209Coding
121. (AAT)41248757804875791Coding
122. (GGA)41249211524921163Coding
123. (GGA)41249214224921433Coding
124. (GGA)41249216924921703Coding
125. (TAG)41249595424959553Coding
126. (AAT)41249658574965868Non coding
127. (TTC)41249713464971357Coding
128. (GTC)41251378505137861Coding
129. (ATT)41251411675141178Coding
130. (GTG)41251776655177676Coding
131. (CAA)41251976025197613Coding
132. (CAG)41252204035220414Coding
133. (AGA)51554143435414357Coding
134. (TAA)41255263355526346Non coding
135. (TAA)41255514585551469Coding
136. (ATA)51555535715553585Non coding
137. (ATT)41255591765559187Non coding
138. (GGA)41256952035695214Coding
139. (AAC)41257330555733066Coding
140. (TAT)41257377935737804Non coding
141. (TAT)41257651735765184Coding
142. (AAT)41257958445795855Coding
143. (TTC)41257999735799984Non coding
144. (CTT)41258067275806738Non coding
145. (AAT)41259573175957328Non coding
146. (AAT)41259755625975573Coding
147. (CAA)41259963825996393Coding
148. (CAA)41259964485996459Coding
149. (ATA)41260059846005995Non coding
150. (ACT)41261078576107868Coding
151. (TCT)51561487686148782Coding
152. (GAT)61862066566206673Coding
153. (TAG)41262250366225047Coding
154. (TTC)41262522906252301Coding
155. (TTA)41263227296322740Non coding
156. (TAT)41263252536325264Coding
157. (AAC)41263545736354584Non coding
158. (AAC)51563889616388975Coding
159. (AAT)41263961736396184Coding-Non coding
160. (ATA)41264080356408046Non coding
161. (AGA)41264512596451270Coding
162. (ATT)41265227326522743Non coding
163. (GAA)41266227026622713Coding
164. (TTG)41266247346624745Non coding
165. (GTA)41266739426673953Coding
166. (TGC)41266788126678823Coding
167. (TAA)41267330786733089Non coding
168. (GTG)41267534336753444Non coding
169. (CAT)51567714616771475Coding
170. (AAT)51567882166788230Coding-Non coding
171. (TAA)41268109826810993Coding
172. (TAT)41268160306816041Coding
173. (TAT)41268173326817343Coding
174. (CAA)41268772656877276Coding
175. (ATG)51568905316890545Coding
176. (AGC)41269114776911488Coding
177. (ACT)41269213876921398Coding
178. (GGT)41269813536981364Coding
179. (TGC)41270656367065647Coding
180. (ATT)41270678517067862Coding
181. (TTC)41272249567224967Coding
182. (AAT)41272411707241181Coding
183. (GAG)41272420017242012Coding
184. (TGC)41273181137318124Coding
185. (ATT)41273309417330952Coding
186. (ATT)41273358957335906Coding
187. (TGC)41273401417340152Coding
188. (TTC)41273700957370106Coding
189. (AGC)41273719547371965Coding
190. (ACT)41274857867485797Coding
191. (ATC)41274883587488369Non coding
192. (TAA)41275177057517716Non coding
193. (ATT)41275475387547549Coding
194. (TTG)41275549087554919Coding
195. (TAC)41276048807604891Coding
196. (TTG)41276716027671613Non coding
197. (TGC)41276840637684074Coding
198. (TAA)41276963417696352Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.