CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Trichodesmium erythraeum IMS101 (NC_008312 7750109 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 559     Density of SSR      : 1SSR/ 13.81 kb   Average length of SSR  : 13.7 bp
Coding      : 257     Non-Coding           : 291   Coding and Non-Coding : 13
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 10 198 275 23 48 559
IMPERFECT 63 515 3565 3024 372 357 7896
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTAT)3125359753608Non coding
2. (TTAA)3127051070521Non coding
3. (AATA)312233478233489Non coding
4. (AACT)312233777233788Non coding
5. (TTAT)312289856289867Non coding
6. (TATT)312297410297421Coding
7. (TAAT)312345074345085Non coding
8. (ATTA)312367613367624Non coding
9. (TTTG)312371297371308Coding
10. (AGAT)312490874490885Non coding
11. (CTTA)312502332502343Non coding
12. (ATTA)312512500512511Non coding
13. (ATTA)312512626512637Non coding
14. (AAGA)520518683518702Non coding
15. (AAGA)312520576520587Coding
16. (TGGA)312535256535267Coding
17. (AAAC)312574387574398Coding
18. (AATA)312596145596156Coding
19. (CTTG)312676502676513Coding
20. (TTTA)624704951704974Non coding
21. (TTTA)312706366706377Non coding
22. (TTCT)312730299730310Coding
23. (TTCT)312734513734524Coding
24. (TAAA)312738206738217Non coding
25. (AAGA)312754058754069Coding
26. (AGTA)312795579795590Non coding
27. (ATTT)312806322806333Non coding
28. (TAAT)312841858841869Coding-Non coding
29. (AATA)312842044842055Non coding
30. (AATA)312843284843295Coding
31. (TAAA)312849056849067Non coding
32. (ATTT)312949085949096Coding
33. (TAAT)31210472001047211Non coding
34. (TACT)31210513831051394Non coding
35. (TATT)31210596071059618Non coding
36. (AATT)31211093261109337Non coding
37. (TAAA)31211168171116828Non coding
38. (AATT)31211230151123026Non coding
39. (TAAG)31211683311168342Non coding
40. (CAAC)41611758041175819Coding
41. (AAAT)31211973251197336Coding-Non coding
42. (TTAA)31212192921219303Non coding
43. (ATTT)31212308311230842Non coding
44. (TTAA)52012727331272752Non coding
45. (AATT)31212914841291495Non coding
46. (TTTC)31213042721304283Coding
47. (TTAA)31213054531305464Non coding
48. (TATG)31213940551394066Non coding
49. (TTTA)31214184771418488Coding
50. (AACT)31214298391429850Non coding
51. (AACT)31214300761430087Non coding
52. (AATC)31214485781448589Non coding
53. (TTTA)31214522121452223Non coding
54. (TTGA)31214745271474538Non coding
55. (AAGA)31215087151508726Non coding
56. (CAAA)31215209501520961Coding
57. (TAAT)31215468381546849Non coding
58. (AATC)31215533091553320Coding-Non coding
59. (TATT)31216261721626183Coding
60. (TTAT)31216576831657694Non coding
61. (ACTG)31217314161731427Coding
62. (ACTT)41618035431803558Non coding
63. (TATT)31218097911809802Non coding
64. (TTTA)31218361041836115Non coding
65. (AATA)31218496891849700Coding
66. (TATG)31218903961890407Non coding
67. (TTAT)31219086201908631Non coding
68. (TAAT)31219137501913761Non coding
69. (AAAG)31219241411924152Non coding
70. (AAAT)31219564391956450Non coding
71. (ATTT)31219708121970823Non coding
72. (CATT)31220106452010656Non coding
73. (AAAG)31220286512028662Non coding
74. (TTTA)31220699052069916Non coding
75. (TTAA)31220897122089723Non coding
76. (AATT)31221396492139660Coding
77. (AAGA)31222394442239455Non coding
78. (TATT)31223006292300640Coding-Non coding
79. (TAAT)41623150302315045Non coding
80. (AATT)31223354302335441Non coding
81. (TAAA)31223750452375056Coding
82. (TAAT)31223896702389681Non coding
83. (AAGT)31224013062401317Non coding
84. (TAAT)31224067082406719Non coding
85. (ATAA)31224093802409391Non coding
86. (ATAA)31224322702432281Non coding
87. (ATTT)31225564802556491Non coding
88. (ATAA)31225584302558441Non coding
89. (GAAG)31227297972729808Coding
90. (TATT)31227564992756510Non coding
91. (TTAT)31227783712778382Non coding
92. (TATT)31227980392798050Non coding
93. (TTTA)31228363162836327Non coding
94. (TAAT)31228865752886586Non coding
95. (ATTA)31229185692918580Coding-Non coding
96. (AAGA)31229246332924644Coding
97. (TTTA)31230078293007840Non coding
98. (AATA)41630229803022995Non coding
99. (AATA)31230423573042368Non coding
100. (TTAT)31230562743056285Non coding
101. (TTAA)31230919853091996Non coding
102. (CTAA)31230922063092217Coding
103. (GTAA)31231310103131021Coding
104. (TTTA)31232080753208086Coding
105. (GCTG)31232110833211094Coding
106. (TTAA)31232290133229024Non coding
107. (TAAT)31232396663239677Coding-Non coding
108. (TAAT)31232722473272258Non coding
109. (TTTA)41632782273278242Non coding
110. (AATC)31233116653311676Non coding
111. (TTAA)31233439303343941Non coding
112. (ATAA)31233707083370719Coding
113. (ATAA)31233830893383100Coding
114. (TTAT)31233883233388334Coding
115. (TGTA)31234424293442440Coding
116. (TGTA)31234446563444667Coding
117. (AAGA)31235999873599998Non coding
118. (AATT)52036078603607879Non coding
119. (TTTA)31236276643627675Non coding
120. (TTTA)31236277483627759Non coding
121. (TTTA)31236278323627843Non coding
122. (AGAA)31236693293669340Coding
123. (TTTA)31236974113697422Coding
124. (AGAA)31238044193804430Coding
125. (AAAT)31238255513825562Non coding
126. (TATT)31238582243858235Non coding
127. (AAGA)31238840173884028Non coding
128. (ATTA)41639006833900698Non coding
129. (TTTA)31239025193902530Coding
130. (TATT)31239272383927249Non coding
131. (TAAT)31239387893938800Non coding
132. (TTAA)41639668603966875Non coding
133. (TTAC)31239929993993010Non coding
134. (AATT)31240266234026634Non coding
135. (TTTG)31240538704053881Non coding
136. (GTTT)31240826634082674Coding
137. (ATTA)31240981574098168Non coding
138. (AGAA)31241014014101412Coding
139. (CTTT)31241434544143465Coding
140. (AAAG)31241500124150023Coding
141. (CTTT)31241506384150649Non coding
142. (AAAT)31241642664164277Coding
143. (AAAT)52041652174165236Non coding
144. (AATA)31241723514172362Non coding
145. (AATA)31242704734270484Coding-Non coding
146. (TTTC)31243004994300510Coding
147. (AAAG)31243298024329813Non coding
148. (TTTG)31243428174342828Coding
149. (TAAT)31243853104385321Non coding
150. (CCAC)31244170404417051Coding
151. (AATG)31244276454427656Coding-Non coding
152. (TAAT)31244731954473206Non coding
153. (TTAT)31244958564495867Non coding
154. (AATA)31245943774594388Coding
155. (CTGC)31246877444687755Non coding
156. (AAAT)31247154394715450Non coding
157. (TTAT)31247274244727435Non coding
158. (GAAA)31248333354833346Non coding
159. (TTCT)31248373254837336Coding
160. (TTAA)31248446824844693Non coding
161. (TATT)31248566864856697Non coding
162. (TTAA)31248655124865523Non coding
163. (ATTA)31248762284876239Non coding
164. (TTTC)31248796444879655Coding
165. (TATT)31249120714912082Coding
166. (AATT)31249268664926877Non coding
167. (ATTT)31249276034927614Non coding
168. (TAAT)31249753024975313Non coding
169. (AATT)31250474065047417Non coding
170. (AGTA)31250545875054598Non coding
171. (GGAA)31250961605096171Coding
172. (TTTG)31251336585133669Coding
173. (TAAG)31251338525133863Non coding
174. (TTAT)31251396565139667Non coding
175. (AACT)31251601045160115Non coding
176. (ATTA)31251742985174309Non coding
177. (CTTA)31251931875193198Non coding
178. (AGTT)31251945925194603Coding
179. (AGGA)31252544235254434Coding
180. (TAAT)31252650945265105Non coding
181. (AAAT)31253483685348379Non coding
182. (TAAT)31253516385351649Coding-Non coding
183. (TATT)31253606785360689Non coding
184. (ATTA)31254444605444471Non coding
185. (ATAA)31254579635457974Non coding
186. (AAAT)31254629485462959Non coding
187. (AATA)31254784065478417Non coding
188. (ACCC)31255106795510690Coding
189. (AATA)31255486245548635Non coding
190. (TTTA)31255487945548805Non coding
191. (AATT)31255651565565167Non coding
192. (ATTT)31255653205565331Non coding
193. (ATTT)31255927555592766Non coding
194. (TAAC)41655950975595112Non coding
195. (AAAG)31256304435630454Coding
196. (GTTT)31256407495640760Coding
197. (TATT)31256620885662099Non coding
198. (TTAG)31256944375694448Non coding
199. (GATT)31257248225724833Non coding
200. (TTAA)31257358135735824Non coding
201. (ATCT)31257400305740041Non coding
202. (AAAT)31257439465743957Non coding
203. (GTCA)31257662675766278Non coding
204. (TATT)31257922475792258Non coding
205. (AATC)31257930495793060Coding
206. (GAAA)31258568625856873Coding
207. (AGAA)31258679295867940Non coding
208. (TAAT)31259024935902504Non coding
209. (ATTT)104059025105902549Non coding
210. (TAAT)31259461275946138Non coding
211. (ATTA)31259660385966049Non coding
212. (TAAT)31259895975989608Coding
213. (ATAC)31260019766001987Coding
214. (AATA)31260058606005871Non coding
215. (TTAT)72860100656010092Non coding
216. (ATTA)31260117236011734Non coding
217. (AAAT)41660153876015402Non coding
218. (TAAT)31260254036025414Non coding
219. (AGAA)31260318686031879Coding
220. (TTTA)31260377176037728Coding
221. (TAAA)31260416806041691Non coding
222. (AATT)31261615266161537Non coding
223. (AAAT)31262120426212053Non coding
224. (AATT)31262540776254088Non coding
225. (ATCT)31262645846264595Coding
226. (ATTA)41662684916268506Non coding
227. (TGTT)31262707036270714Non coding
228. (TAAT)31262942706294281Non coding
229. (CTAT)31263284556328466Non coding
230. (TATT)31263510936351104Non coding
231. (TAAA)31263622676362278Coding
232. (AATT)31263690346369045Non coding
233. (AAAT)31263932696393280Non coding
234. (TAAT)31264587946458805Non coding
235. (AAAG)31264647346464745Coding
236. (CTTA)31264782966478307Non coding
237. (AAAT)31264919646491975Non coding
238. (TTAT)31265168096516820Non coding
239. (GGAA)31265735646573575Non coding
240. (CAAA)31265901036590114Non coding
241. (TAAT)31265902836590294Coding
242. (GATG)31265924456592456Coding
243. (ATAA)31266933416693352Non coding
244. (ATTA)31267159596715970Non coding
245. (TATT)31268255156825526Non coding
246. (CTTT)31268596666859677Coding
247. (TTTA)31268726196872630Coding
248. (AATT)31269556016955612Coding
249. (TAAA)31270145337014544Non coding
250. (TAAA)31270207917020802Non coding
251. (TGTT)31270610697061080Coding
252. (AAAC)31270945337094544Non coding
253. (TAAT)31271348817134892Non coding
254. (GGAT)31271623697162380Coding
255. (GAGC)31271660387166049Non coding
256. (TAAT)31271691997169210Non coding
257. (ATGA)31272049107204921Non coding
258. (TATT)31272135497213560Non coding
259. (TAGC)31272234757223486Non coding
260. (TATT)31272301627230173Coding
261. (AAAT)31272711317271142Non coding
262. (TTAA)41672717127271727Non coding
263. (CTCA)31272743167274327Coding
264. (AATA)31274052737405284Non coding
265. (AAGC)31274056597405670Non coding
266. (ACTA)31274079977408008Non coding
267. (ATTA)41674401977440212Non coding
268. (TTAT)31274936697493680Non coding
269. (TTTA)31275431717543182Non coding
270. (AATT)52075813027581321Non coding
271. (CATC)31276016487601659Coding
272. (GGCT)31276470987647109Non coding
273. (TATT)41676986567698671Non coding
274. (CACT)31277332507733261Coding
275. (ATAA)41677366657736680Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.