MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Aegilops speltoides (NC_022666 476091 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 80     Density of SSR      : 1SSR/ 5.81 kb   Average length of SSR  : 13.45 bp
Coding      : 5     Non-Coding           : 76   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 10 15 38 9 5 80
IMPERFECT 0 62 210 213 44 29 558
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TG)6121235712368Non coding
2. (TA)6121516715178Non coding
3. (AATG)3122984229853Non coding
4. (AATG)3122985529866Non coding
5. (GTATG)3153853938553Non coding
6. (AAGC)3124201442025Non coding
7. (AGTC)3124413744148Non coding
8. (AG)8165257152586Non coding
9. (ATTT)3125906859079Coding
10. (AAGA)3126582065831Non coding
11. (GAGC)3126687866889Non coding
12. (TTC)4126975369764Non coding
13. (CTC)4127281772828Non coding
14. (AATG)3127863578646Coding
15. (GCT)5158899489008Non coding
16. (CCGT)3129002690037Non coding
17. (CATT)312101499101510Non coding
18. (TTCA)312102748102759Non coding
19. (TA)612105346105357Non coding
20. (GAAA)312113032113043Non coding
21. (TAATCA)318120530120547Non coding
22. (TAGCGT)318127554127571Non coding
23. (TTCTA)315129615129629Non coding
24. (ACT)412132581132592Non coding
25. (TCTTAT)424134589134612Non coding
26. (TTGA)312135153135164Non coding
27. (TTCC)312136712136723Non coding
28. (TA)612147741147752Non coding
29. (CTT)412159707159718Non coding
30. (TA)714161049161062Non coding
31. (CATC)312163673163684Non coding
32. (AGA)412180943180954Non coding
33. (GCCG)312181928181939Non coding
34. (CAGT)312183045183056Non coding
35. (CTA)412184827184838Non coding
36. (TCAAT)315193226193240Non coding
37. (TCTA)312196472196483Non coding
38. (GTTCA)315199854199868Non coding
39. (TA)612200024200035Non coding
40. (AAG)412205590205601Non coding
41. (ATTC)312207133207144Non coding
42. (TCAT)312209230209241Non coding
43. (T)1414209466209479Non coding
44. (TTCT)312211606211617Coding
45. (AGAAT)420214101214120Non coding
46. (CATAA)315215531215545Coding
47. (CATT)312220502220513Non coding
48. (TTCA)312221751221762Non coding
49. (TA)612224349224360Non coding
50. (AAT)515231233231247Non coding
51. (ATA)412238719238730Non coding
52. (T)1313238908238920Non coding
53. (CTCC)312240648240659Non coding
54. (GCTA)312244594244605Non coding
55. (CCAC)312265317265328Non coding
56. (AAAG)312268140268151Non coding
57. (CAG)412270663270674Non coding
58. (TTCCAA)318289962289979Non coding
59. (TA)612295243295254Non coding
60. (AATG)312297839297850Non coding
61. (AATG)312299090299101Non coding
62. (T)1313301606301618Non coding
63. (TTCAT)315304828304842Non coding
64. (GGC)412319193319204Non coding
65. (ATTC)312322283322294Non coding
66. (TGGAT)315326583326597Non coding
67. (ATTC)416326991327006Non coding
68. (TTCT)312339665339676Non coding
69. (TAA)412354863354874Coding
70. (CAAG)312358477358488Non coding
71. (TA)612390626390637Non coding
72. (AATG)312393222393233Non coding
73. (AATG)312394473394484Non coding
74. (GCAGAT)318403154403171Non coding
75. (TTGG)312421177421188Non coding
76. (TAGC)312423599423610Non coding
77. (AAT)412429698429709Non coding
78. (TGGAT)315443688443702Non coding
79. (ATTC)416444096444111Non coding
80. (AAG)412471647471658Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.