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Organism:
Aegilops speltoides
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(NC_022666 , 476091 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
1
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Overlapping Compound
:
0
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Perfect
:
80
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Density of SSR
:
1SSR/
5.81
kb
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Average length of SSR
:
13.45
bp
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Coding
:
5
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Non-Coding
:
76
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Coding and Non-Coding
:
0
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
|
3
|
10
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15
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38
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9
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5
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80
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (GTATG)3 | 15 | 38539 | 38553 | Non coding |
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2.
| (TTCTA)3 | 15 | 129615 | 129629 | Non coding |
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3.
| (TCAAT)3 | 15 | 193226 | 193240 | Non coding |
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4.
| (GTTCA)3 | 15 | 199854 | 199868 | Non coding |
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5.
| (AGAAT)4 | 20 | 214101 | 214120 | Non coding |
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6.
| (CATAA)3 | 15 | 215531 | 215545 | Coding |
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7.
| (TTCAT)3 | 15 | 304828 | 304842 | Non coding |
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8.
| (TGGAT)3 | 15 | 326583 | 326597 | Non coding |
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9.
| (TGGAT)3 | 15 | 443688 | 443702 | Non coding |
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Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
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