MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Aegilops speltoides (NC_022666 476091 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 80     Density of SSR      : 1SSR/ 5.81 kb   Average length of SSR  : 13.45 bp
Coding      : 5     Non-Coding           : 76   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 10 15 38 9 5 80
IMPERFECT 0 62 210 213 44 29 558
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATG)3122984229853Non coding
2. (AATG)3122985529866Non coding
3. (AAGC)3124201442025Non coding
4. (AGTC)3124413744148Non coding
5. (ATTT)3125906859079Coding
6. (AAGA)3126582065831Non coding
7. (GAGC)3126687866889Non coding
8. (AATG)3127863578646Coding
9. (CCGT)3129002690037Non coding
10. (CATT)312101499101510Non coding
11. (TTCA)312102748102759Non coding
12. (GAAA)312113032113043Non coding
13. (TTGA)312135153135164Non coding
14. (TTCC)312136712136723Non coding
15. (CATC)312163673163684Non coding
16. (GCCG)312181928181939Non coding
17. (CAGT)312183045183056Non coding
18. (TCTA)312196472196483Non coding
19. (ATTC)312207133207144Non coding
20. (TCAT)312209230209241Non coding
21. (TTCT)312211606211617Coding
22. (CATT)312220502220513Non coding
23. (TTCA)312221751221762Non coding
24. (CTCC)312240648240659Non coding
25. (GCTA)312244594244605Non coding
26. (CCAC)312265317265328Non coding
27. (AAAG)312268140268151Non coding
28. (AATG)312297839297850Non coding
29. (AATG)312299090299101Non coding
30. (ATTC)312322283322294Non coding
31. (ATTC)416326991327006Non coding
32. (TTCT)312339665339676Non coding
33. (CAAG)312358477358488Non coding
34. (AATG)312393222393233Non coding
35. (AATG)312394473394484Non coding
36. (TTGG)312421177421188Non coding
37. (TAGC)312423599423610Non coding
38. (ATTC)416444096444111Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.