MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Ajuga reptans (NC_023103 352069 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 60     Density of SSR      : 1SSR/ 5.87 kb   Average length of SSR  : 12.35 bp
Coding      : 1     Non-Coding           : 58   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 16 36 6 0 60
IMPERFECT 4 59 129 165 29 13 399
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTTTT)315917931Coding
2. (TTTC)31283698380Non coding
3. (AGAA)3122198121992Non coding
4. (GGTC)3123048630497Non coding
5. (ATTA)3123152331534Non coding
6. (TAAA)3124560145612Non coding
7. (ACT)4124841548426Non coding
8. (ATAG)3125082950840Non coding
9. (CTTT)3125118451195Non coding
10. (TTTC)3125266252673Non coding
11. (CTGG)3125351253523Non coding
12. (AAG)4125915859169Non coding
13. (GCAT)3126262062631Non coding
14. (AGAC)3126547865489Non coding
15. (AAAAG)3157241172425Non coding
16. (CATA)312104595104606Non coding
17. (ATAG)312105951105962Non coding
18. (GCTT)312107704107715Non coding
19. (ATAG)312110022110033Non coding
20. (GAGG)312115718115729Non coding
21. (AGTG)312130367130378Non coding
22. (CTT)412131351131362Non coding
23. (GAAA)312135159135170Non coding
24. (AGTG)312137557137568Non coding
25. (AGTC)312154385154396Non coding
26. (GGAA)312161211161222Non coding
27. (ATA)412172889172900Non coding
28. (CTATT)315184364184378Non coding
29. (GAA)412189898189909Non coding
30. (CTTCT)315190569190583Non coding
31. (CAAG)312196615196626Non coding
32. (TCT)412200260200271Non coding
33. (TTC)412200784200795Non coding
34. (CTA)412204369204380Non coding
35. (CTTTT)315208273208287Non coding
36. (CTA)412214207214218Non coding
37. (GGAA)312222072222083Non coding
38. (TCT)412228364228375Non coding
39. (TTCT)312231459231470Non coding
40. (AAG)412231635231646Non coding
41. (AAGT)312234809234820Non coding
42. (TAC)412235809235820Non coding
43. (GAAA)312237830237841Non coding
44. (AAGA)312242846242857Non coding
45. (TGC)515243989244003Non coding
46. (AGA)412244333244344Non coding
47. (AAGA)312250154250165Non coding
48. (ACTAG)315251084251098Coding-Non coding
49. (TA)612291923291934Non coding
50. (CTT)412293466293477Non coding
51. (TACA)312295822295833Non coding
52. (TA)612296527296538Non coding
53. (CTTT)312302082302093Non coding
54. (ATGC)312310075310086Non coding
55. (AAAG)312314237314248Non coding
56. (AGGT)312321844321855Non coding
57. (TCTT)312331583331594Non coding
58. (GCCC)312339832339843Non coding
59. (GATG)312343078343089Non coding
60. (AAG)412351241351252Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.