MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Ajuga reptans (NC_023103 352069 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 60     Density of SSR      : 1SSR/ 5.87 kb   Average length of SSR  : 12.35 bp
Coding      : 1     Non-Coding           : 58   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 16 36 6 0 60
IMPERFECT 4 59 129 165 29 13 399
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTC)31283698380Non coding
2. (AGAA)3122198121992Non coding
3. (GGTC)3123048630497Non coding
4. (ATTA)3123152331534Non coding
5. (TAAA)3124560145612Non coding
6. (ATAG)3125082950840Non coding
7. (CTTT)3125118451195Non coding
8. (TTTC)3125266252673Non coding
9. (CTGG)3125351253523Non coding
10. (GCAT)3126262062631Non coding
11. (AGAC)3126547865489Non coding
12. (CATA)312104595104606Non coding
13. (ATAG)312105951105962Non coding
14. (GCTT)312107704107715Non coding
15. (ATAG)312110022110033Non coding
16. (GAGG)312115718115729Non coding
17. (AGTG)312130367130378Non coding
18. (GAAA)312135159135170Non coding
19. (AGTG)312137557137568Non coding
20. (AGTC)312154385154396Non coding
21. (GGAA)312161211161222Non coding
22. (CAAG)312196615196626Non coding
23. (GGAA)312222072222083Non coding
24. (TTCT)312231459231470Non coding
25. (AAGT)312234809234820Non coding
26. (GAAA)312237830237841Non coding
27. (AAGA)312242846242857Non coding
28. (AAGA)312250154250165Non coding
29. (TACA)312295822295833Non coding
30. (CTTT)312302082302093Non coding
31. (ATGC)312310075310086Non coding
32. (AAAG)312314237314248Non coding
33. (AGGT)312321844321855Non coding
34. (TCTT)312331583331594Non coding
35. (GCCC)312339832339843Non coding
36. (GATG)312343078343089Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.