MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Anomodon rugelii (NC_016121 104239 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 22     Density of SSR      : 1SSR/ 4.74 kb   Average length of SSR  : 12.86 bp
Coding      : 3     Non-Coding           : 18   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 4 7 0 0 22
IMPERFECT 12 21 34 50 7 5 129
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATAG)3121130611317Non coding
2. (AT)6121471714728Non coding
3. (TTTA)3121553815549Coding
4. (A)12121661016621Coding
5. (AT)6122039320404Non coding
6. (ATAA)3122576425775Non coding
7. (TA)6122655326564Non coding
8. (AT)6122841128422Non coding
9. (AATC)3123372233733Non coding
10. (GAA)5154111141125Non coding
11. (AAT)4124114241153Non coding
12. (GAA)6184976549782Non coding
13. (ATAA)3125491454925Non coding
14. (AT)6125567755688Non coding
15. (AT)7145815358166Non coding
16. (GAA)4126618366194Non coding
17. (ATTT)3127204972060Coding
18. (CT)6127464274653Non coding
19. (AT)10207468174700Non coding
20. (TAGA)3129108191092Coding-Non coding
21. (TA)6129937399384Non coding
22. (AT)612104159104170Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.