MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Arabidopsis thaliana (NC_001284 366924 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 64     Density of SSR      : 1SSR/ 5.73 kb   Average length of SSR  : 12.58 bp
Coding      : 8     Non-Coding           : 55   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 10 38 7 0 64
IMPERFECT 7 33 161 168 21 8 398
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCT)31229342945Non coding
2. (CATTC)31530073021Non coding
3. (GAA)51585078521Non coding
4. (AATG)3122693626947Coding
5. (ACTC)3122984429855Non coding
6. (TC)6123472334734Coding
7. (TTC)4124277142782Non coding
8. (ACTT)3124571945730Non coding
9. (TTCG)3125601156022Coding
10. (ATAAG)3155735657370Non coding
11. (T)14145941859431Non coding
12. (TTC)4126767567686Non coding
13. (AACA)3127153171542Non coding
14. (AAGA)3128795887969Non coding
15. (ATTT)3128811488125Non coding
16. (GTAA)3129243692447Non coding
17. (GAAA)3129691596926Non coding
18. (TTCA)312106399106410Non coding
19. (AGAA)312113692113703Non coding
20. (TTC)412115018115029Non coding
21. (GAATG)315119506119520Coding
22. (AGAA)312119582119593Coding
23. (ACAG)312120405120416Non coding
24. (TGCTT)315121055121069Non coding
25. (CTT)412121143121154Non coding
26. (TA)816137351137366Non coding
27. (AAGA)312139138139149Non coding
28. (CGGC)312140106140117Non coding
29. (TTCA)312143732143743Non coding
30. (TA)612143904143915Non coding
31. (ACTAG)315144293144307Coding-Non coding
32. (TTCT)312146313146324Non coding
33. (TTTC)312148824148835Non coding
34. (CTGT)312153380153391Non coding
35. (TAGG)312159336159347Non coding
36. (A)1313166524166536Non coding
37. (AGAAC)315168420168434Non coding
38. (GACT)312178597178608Non coding
39. (ACTT)312179884179895Non coding
40. (GCTT)312202253202264Non coding
41. (TTTC)312204746204757Non coding
42. (AAAG)312208395208406Non coding
43. (CGTT)312218011218022Non coding
44. (AGAA)312219427219438Non coding
45. (ATTG)312228681228692Coding
46. (A)1414232677232690Coding
47. (GAAA)312247269247280Non coding
48. (AATTC)315248980248994Non coding
49. (AG)612251018251029Non coding
50. (ATGA)312255096255107Non coding
51. (TGTT)312282669282680Non coding
52. (GAA)412294698294709Non coding
53. (CTTT)312296022296033Non coding
54. (GAAA)312299392299403Non coding
55. (TCTT)312306645306656Non coding
56. (CAAC)312307900307911Non coding
57. (TCTT)312308331308342Non coding
58. (ATA)412311868311879Non coding
59. (GAA)412313911313922Non coding
60. (C)1212314081314092Non coding
61. (AT)816314163314178Non coding
62. (GTA)412328847328858Non coding
63. (GGC)412347171347182Coding
64. (GAAA)312348966348977Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.