MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Arabidopsis thaliana (NC_001284 366924 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 64     Density of SSR      : 1SSR/ 5.73 kb   Average length of SSR  : 12.58 bp
Coding      : 8     Non-Coding           : 55   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 10 38 7 0 64
IMPERFECT 7 33 161 168 21 8 398
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCT)31229342945Non coding
2. (AATG)3122693626947Coding
3. (ACTC)3122984429855Non coding
4. (ACTT)3124571945730Non coding
5. (TTCG)3125601156022Coding
6. (AACA)3127153171542Non coding
7. (AAGA)3128795887969Non coding
8. (ATTT)3128811488125Non coding
9. (GTAA)3129243692447Non coding
10. (GAAA)3129691596926Non coding
11. (TTCA)312106399106410Non coding
12. (AGAA)312113692113703Non coding
13. (AGAA)312119582119593Coding
14. (ACAG)312120405120416Non coding
15. (AAGA)312139138139149Non coding
16. (CGGC)312140106140117Non coding
17. (TTCA)312143732143743Non coding
18. (TTCT)312146313146324Non coding
19. (TTTC)312148824148835Non coding
20. (CTGT)312153380153391Non coding
21. (TAGG)312159336159347Non coding
22. (GACT)312178597178608Non coding
23. (ACTT)312179884179895Non coding
24. (GCTT)312202253202264Non coding
25. (TTTC)312204746204757Non coding
26. (AAAG)312208395208406Non coding
27. (CGTT)312218011218022Non coding
28. (AGAA)312219427219438Non coding
29. (ATTG)312228681228692Coding
30. (GAAA)312247269247280Non coding
31. (ATGA)312255096255107Non coding
32. (TGTT)312282669282680Non coding
33. (CTTT)312296022296033Non coding
34. (GAAA)312299392299403Non coding
35. (TCTT)312306645306656Non coding
36. (CAAC)312307900307911Non coding
37. (TCTT)312308331308342Non coding
38. (GAAA)312348966348977Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.