MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.83 kb   Average length of SSR  : 12.68 bp
Coding      : 20     Non-Coding           : 798   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AT13483495Non coding
2. GT1120032013Non coding
3. CT211073210752Non coding
4. GA121075310764Non coding
5. TC112411924129Non coding
6. AT112465824668Non coding
7. TC113329433304Non coding
8. CA113344333453Non coding
9. GA115582855838Non coding
10. TA116480664816Non coding
11. AT127331173322Non coding
12. AT118914489154Non coding
13. GA129368793698Non coding
14. TA119672596735Non coding
15. AT13106789106801Non coding
16. AG13114524114536Non coding
17. AT13118059118071Non coding
18. AT11120871120881Non coding
19. AG11143329143339Non coding
20. AG11145997146007Non coding
21. GA11161057161067Non coding
22. TC15167363167377Non coding
23. CA12186462186473Non coding
24. TG11191688191698Non coding
25. TG11194672194682Non coding
26. TA12234430234441Non coding
27. AG11236907236917Non coding
28. AG12244101244112Non coding
29. TA12246681246692Non coding
30. TA17253089253105Non coding
31. AG12254198254209Non coding
32. CT11259761259771Non coding
33. AG11272955272965Non coding
34. AG12284290284301Non coding
35. CA12285217285228Non coding
36. TA22291790291811Non coding
37. AT13299356299368Non coding
38. CT11307486307496Non coding
39. CT14337358337371Non coding
40. GA16340698340713Non coding
41. AT11343789343799Non coding
42. AG11343993344003Non coding
43. TC11356667356677Non coding
44. CT12367249367260Non coding
45. TA11367710367720Non coding
46. CT12372200372211Non coding
47. TA13372241372253Non coding
48. GA11374807374817Non coding
49. AG11375932375942Non coding
50. CT12378501378512Non coding
51. TC12418125418136Non coding
52. TC11418617418627Non coding
53. TA17430614430630Non coding
54. AT11434587434597Non coding
55. TA15453060453074Non coding
56. CT12460768460779Non coding
57. CT11471501471511Non coding
58. TC12472824472835Non coding
59. CA11481101481111Non coding
60. TA14491166491179Non coding
61. TA13506903506915Non coding
62. TC11512201512211Non coding
63. TC11515134515144Non coding
64. CT16516464516479Non coding
65. TA14521503521516Non coding
66. AG11534904534914Non coding
67. AT12538634538645Non coding
68. GC12540907540918Non coding
69. TA11541875541885Non coding
70. CA11542352542362Non coding
71. AT14546415546428Non coding
72. GT11558529558539Coding
73. AG11559667559677Non coding
74. AC11559886559896Non coding
75. TA11577112577122Non coding
76. AG11592858592868Non coding
77. GT11604679604689Non coding
78. GT14608508608521Non coding
79. TA12609222609233Non coding
80. AT11620017620027Non coding
81. GA11622687622697Non coding
82. TA14622967622980Non coding
83. CT13625560625572Non coding
84. TA15644286644300Non coding
85. TC11647098647108Non coding
86. CT14653604653617Non coding
87. TA11654501654511Coding
88. TA11660205660215Non coding
89. TC12660328660339Non coding
90. CT12670636670647Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.