MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 110     Density of SSR      : 1SSR/ 6.2 kb   Average length of SSR  : 12.8 bp
Coding      : 2     Non-Coding           : 108   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCTT)31560606074Non coding
2. (CT)9181073210749Non coding
3. (GTGA)3121846818479Non coding
4. (ATAG)3122082420835Non coding
5. (CTTT)3123438834399Non coding
6. (AAGA)3123618236193Non coding
7. (GAAT)3125615256163Non coding
8. (TGC)4125769357704Non coding
9. (TACT)3126397863989Non coding
10. (GTAG)3126419464205Non coding
11. (ATTA)3127864678657Non coding
12. (CTT)4129378593796Non coding
13. (TTTC)3129606596076Non coding
14. (TCT)412102371102382Non coding
15. (T)1414115048115061Non coding
16. (CCTT)312121583121594Non coding
17. (CTTG)312134421134432Non coding
18. (TCT)515137000137014Non coding
19. (TTG)412140367140378Non coding
20. (TACGG)315143291143305Non coding
21. (ATT)412145895145906Non coding
22. (AAAAGG)318155560155577Non coding
23. (AGAA)312156204156215Non coding
24. (CTT)515160573160587Non coding
25. (AAAG)312163290163301Non coding
26. (TC)612167363167374Non coding
27. (CTTTC)315171396171410Non coding
28. (CGAT)312193074193085Non coding
29. (TTA)412201874201885Non coding
30. (ACTC)312203831203842Non coding
31. (AAG)412208037208048Non coding
32. (AGAA)312209341209352Non coding
33. (AAGA)312212681212692Non coding
34. (AAG)412215063215074Non coding
35. (GGATA)315220081220095Non coding
36. (AGA)412220116220127Non coding
37. (TCT)412220276220287Non coding
38. (AGAA)312248132248143Non coding
39. (AGAA)312249457249468Non coding
40. (GAA)412251492251503Non coding
41. (TTA)412265024265035Non coding
42. (CAAT)312267579267590Non coding
43. (TTTC)312270575270586Non coding
44. (TTCC)312270613270624Non coding
45. (GACC)312288010288021Non coding
46. (TA)918291790291807Non coding
47. (ATT)412299313299324Non coding
48. (TTC)412300521300532Non coding
49. (AAT)412328268328279Non coding
50. (TTGC)312334129334140Non coding
51. (CT)612337358337369Non coding
52. (GA)714340698340711Non coding
53. (GAA)412347465347476Non coding
54. (GAAC)312347583347594Non coding
55. (AAGC)312352485352496Non coding
56. (GAAA)312366570366581Non coding
57. (AGA)412372465372476Non coding
58. (AATC)312377536377547Non coding
59. (TATC)312395876395887Non coding
60. (ATCGA)315396576396590Non coding
61. (TCTA)312398727398738Non coding
62. (AATTG)315400868400882Non coding
63. (AGAA)312400888400899Non coding
64. (CTT)412406450406461Coding
65. (AAT)515421395421409Non coding
66. (GAGC)312436420436431Non coding
67. (GGCC)312437306437317Non coding
68. (TTTC)312447544447555Non coding
69. (TA)714453060453073Non coding
70. (ATCA)312475243475254Non coding
71. (CTTA)312479047479058Non coding
72. (CAAGG)420479987480006Non coding
73. (TA)612491166491177Non coding
74. (TCTT)312495220495231Non coding
75. (TAAC)312498300498311Non coding
76. (CATT)312504334504345Coding
77. (GTAT)312506473506484Non coding
78. (TA)612506903506914Non coding
79. (CCTT)312510930510941Non coding
80. (AAGA)312513722513733Non coding
81. (CT)714516464516477Non coding
82. (AGAA)312521689521700Non coding
83. (CCCTTA)318532980532997Non coding
84. (ATCC)312534366534377Non coding
85. (GATA)312546388546399Non coding
86. (TGAA)312548729548740Non coding
87. (CTTT)312548905548916Non coding
88. (TTCA)312556192556203Non coding
89. (CTTAA)315561031561045Non coding
90. (TCTT)312564380564391Non coding
91. (CCAT)312571240571251Non coding
92. (CTTTT)315575997576011Non coding
93. (AAGC)312587755587766Non coding
94. (GGCG)312590478590489Non coding
95. (GT)612608508608519Non coding
96. (TGAA)312608536608547Non coding
97. (ATA)515612197612211Non coding
98. (AATC)312612267612278Non coding
99. (AAT)412635369635380Non coding
100. (CCTAA)315640968640982Non coding
101. (AGA)412643980643991Non coding
102. (CATAA)315647020647034Non coding
103. (CTTG)312662916662927Non coding
104. (TTCA)312663309663320Non coding
105. (AATA)312668431668442Non coding
106. (CCTT)312676246676257Non coding
107. (TTA)412677335677346Non coding
108. (TTA)412679980679991Non coding
109. (CCAATA)318680221680238Non coding
110. (TTCT)312682042682053Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.