MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.83 kb   Average length of SSR  : 12.68 bp
Coding      : 20     Non-Coding           : 798   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TATAC1539423956Non coding
2. AGGAA142009920112Non coding
3. TTACC142326223275Non coding
4. ATCAG143555535568Non coding
5. TTTCG144100541018Non coding
6. TCCCT154177841792Non coding
7. TCCTT156279962813Non coding
8. GAAAA147191471927Non coding
9. AAATA14110549110562Non coding
10. ATTGG14130674130687Non coding
11. GAATC14145651145664Non coding
12. AAAGG15149588149602Non coding
13. GCAGG14162047162060Non coding
14. CATAC14163335163348Non coding
15. GAAAA15166363166377Non coding
16. CTTTC20171396171415Non coding
17. GTATG19178269178287Non coding
18. AATTG14199192199205Non coding
19. ATTCT14212647212660Non coding
20. TAGGG15212990213004Non coding
21. TCCTC14223923223936Non coding
22. GGAAA14232758232771Non coding
23. TGAAC20251802251821Non coding
24. GATAG16265858265873Non coding
25. CATAG14284852284865Non coding
26. GCTCC14295600295613Non coding
27. GAGAA14306971306984Non coding
28. GAAAG14317822317835Non coding
29. TCTTT15367585367599Non coding
30. ACCGG15380113380127Non coding
31. GCTAT14399312399325Non coding
32. AATAG15405454405468Non coding
33. AAGAC14410802410815Non coding
34. TCTTT15418380418394Non coding
35. AGCAA14439742439755Non coding
36. AATAA14441746441759Coding
37. ATTCC15442421442435Non coding
38. GAAGA15448339448353Non coding
39. GTAAT15450585450599Non coding
40. TCTTT14452140452153Non coding
41. ATGAA14458332458345Non coding
42. TCTTT14467663467676Non coding
43. AATAA15476599476613Non coding
44. AAAGA14481782481795Non coding
45. AATAT15489305489319Non coding
46. GAACT15514371514385Non coding
47. AGGAA15522781522795Non coding
48. CGTAA24533169533192Non coding
49. CATAC14568031568044Non coding
50. AATAG14583022583035Non coding
51. AAAAG14599848599861Non coding
52. AATAG14608338608351Non coding
53. CATCC15611705611719Non coding
54. TCTCC15614578614592Non coding
55. AAAGA14622017622030Non coding
56. CCTAA19640968640986Non coding
57. GGCTT16649490649505Non coding
58. CTGAT15655011655025Non coding
59. TTTAT14658500658513Non coding
60. GTTCT15670766670780Non coding
61. GGTTC15672522672536Non coding
62. TGATA16674553674568Non coding
63. AAGCA15676579676593Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.