MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.83 kb   Average length of SSR  : 12.68 bp
Coding      : 20     Non-Coding           : 798   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TAA11376386Non coding
2. AGT1248944905Non coding
3. AGT1249244935Non coding
4. AGT1249474958Non coding
5. CTA1353425354Non coding
6. AGA1157765786Non coding
7. GGA1259395950Non coding
8. TCT1183508360Non coding
9. TAG1298279838Non coding
10. ACA111151711527Non coding
11. AAG131208512097Non coding
12. CTT121334613357Non coding
13. ATC111899419004Non coding
14. TAT142228022293Non coding
15. ATA112229422304Non coding
16. TCT113205232062Non coding
17. TAG153452434538Non coding
18. TTG123691836929Non coding
19. AGA113797537985Non coding
20. AAG113803638046Non coding
21. TCT124242342434Non coding
22. TCT124298642997Non coding
23. GAA114316443174Non coding
24. CTC134461444626Non coding
25. TTG124617046181Non coding
26. CTT124669046701Coding
27. CAA124676446775Coding
28. CAC135091650928Non coding
29. GAT135129651308Non coding
30. GAA125299153002Non coding
31. CAG125411354124Non coding
32. TGC155769357707Non coding
33. CTT125852058531Non coding
34. TCC125865958670Non coding
35. GCT126021260223Non coding
36. GGA126112761138Non coding
37. TCT126405964070Non coding
38. AGA126876568776Non coding
39. AAG126979369804Non coding
40. ACC127412174132Non coding
41. AAT128643586446Non coding
42. AAC128686686877Non coding
43. TAA128800688017Non coding
44. GAG128932489335Non coding
45. TAA128993789948Non coding
46. CTT129428194292Non coding
47. GTT12100272100283Non coding
48. TCT14102371102384Non coding
49. TTC13103223103235Non coding
50. TTC12104005104016Non coding
51. ATA11106548106558Non coding
52. TTG11107176107186Non coding
53. ATT11108222108232Non coding
54. ATA12110827110838Non coding
55. GCA12111033111044Non coding
56. AGC12111219111230Non coding
57. AGA14112260112273Non coding
58. ACC12112662112673Coding
59. GTT12121525121536Non coding
60. CTT12125210125221Non coding
61. TTA11131727131737Non coding
62. AAG12132532132543Non coding
63. TGC11134072134082Non coding
64. AGA11135448135458Non coding
65. TCT18137000137017Non coding
66. GAT13137328137340Non coding
67. AGA13138708138720Non coding
68. TCT12139161139172Non coding
69. GAT12139581139592Non coding
70. GGA12144877144888Non coding
71. ATT15145892145906Non coding
72. CAA12149159149170Non coding
73. TGA12151065151076Non coding
74. GAA12157725157736Non coding
75. AGA12161948161959Non coding
76. AGA13162272162284Non coding
77. CAA12167667167678Non coding
78. TCT12168701168712Non coding
79. TCT11170512170522Non coding
80. AGA13175323175335Non coding
81. GCT11177857177867Non coding
82. AAT11178350178360Non coding
83. TCT12181346181357Non coding
84. GAA12183314183325Non coding
85. TTC12183908183919Non coding
86. CTT11184368184378Non coding
87. CAA11186369186379Non coding
88. ATT12186988186999Coding-Non coding
89. TTA12187008187019Coding
90. TAT11189501189511Non coding
91. GAA15191775191789Non coding
92. GAG11192954192964Non coding
93. AAG12193707193718Non coding
94. GAA13194053194065Non coding
95. AAG12197767197778Non coding
96. TCT11200986200996Non coding
97. TAT13201890201902Non coding
98. AAG12205702205713Non coding
99. TGA12207227207238Non coding
100. AGA12208038208049Non coding
101. TTA13210473210485Non coding
102. ACT12210511210522Non coding
103. AGA12215064215075Non coding
104. TCT12218306218317Non coding
105. GAT11218601218611Coding
106. GGA11219393219403Non coding
107. AGA15220113220127Non coding
108. AAG12221619221630Non coding
109. GCT11224503224513Non coding
110. TGT11224592224602Non coding
111. ATC11226886226896Non coding
112. ATC11228169228179Non coding
113. GAA15228611228625Non coding
114. GTG12229984229995Non coding
115. TCT11230533230543Non coding
116. CGA12231606231617Non coding
117. CTG15232180232194Non coding
118. CTT12233164233175Non coding
119. GAG12237044237055Non coding
120. CAC11237661237671Non coding
121. AAG12239846239857Non coding
122. CTT11240141240151Non coding
123. GAA11240455240465Non coding
124. GAA11242381242391Non coding
125. ATC12244238244249Non coding
126. TGC12247801247812Non coding
127. CTT12247949247960Non coding
128. GAA11249824249834Non coding
129. TCG12250838250849Non coding
130. GAA15251489251503Non coding
131. CTT12251511251522Non coding
132. TAT12255835255846Non coding
133. AGA11258325258335Non coding
134. AGA13260408260420Non coding
135. ATA12262212262223Non coding
136. AAG13264609264621Non coding
137. TTA15265021265035Non coding
138. GAA13267546267558Non coding
139. TTC11269774269784Non coding
140. TCT11273432273442Non coding
141. CCG11275993276003Non coding
142. TAA11277437277447Non coding
143. ATT12278030278041Non coding
144. CTG12278118278129Non coding
145. CTT11281761281771Non coding
146. TCT11286857286867Non coding
147. CAG12288186288197Non coding
148. TAA13291296291308Non coding
149. AGT12291459291470Non coding
150. AAT12298711298722Non coding
151. AAT11299347299357Non coding
152. TTC16300521300536Non coding
153. GAA13304034304046Non coding
154. GAA12306012306023Non coding
155. AAG13307519307531Non coding
156. CTT11308701308711Non coding
157. GCT13314659314671Non coding
158. TTC11325393325403Non coding
159. CTA12326593326604Non coding
160. TTC13328635328647Non coding
161. AGG12332791332802Non coding
162. TCT11336811336821Non coding
163. CTT12342138342149Non coding
164. CGC12343149343160Non coding
165. CTT15343899343913Non coding
166. TCC11344244344254Non coding
167. CTT13345997346009Non coding
168. GAA15347462347476Non coding
169. TTA12360421360432Non coding
170. AAG14360773360786Non coding
171. ATC11361922361932Non coding
172. TAA12362205362216Non coding
173. AGT15365948365962Non coding
174. GAA12371283371294Non coding
175. ATC12371819371830Non coding
176. CTG12372315372326Non coding
177. AGA15372465372479Non coding
178. GCT12373744373755Non coding
179. CTA11376631376641Non coding
180. AGA13383764383776Non coding
181. AGA12396119396130Non coding
182. TGC11398308398318Non coding
183. GAT12398534398545Non coding
184. GCA12398645398656Non coding
185. GAG11402274402284Non coding
186. AGT11407879407889Non coding
187. AAG12412248412259Non coding
188. TCT14419387419400Non coding
189. GGA12421006421017Non coding
190. ATA22421389421410Non coding
191. CCT13421516421528Non coding
192. TTC13433264433276Non coding
193. CAA12438113438124Non coding
194. AGA15439506439520Non coding
195. GTC12442475442486Non coding
196. CAG13454979454991Non coding
197. TCT11456955456965Non coding
198. TAG11462170462180Non coding
199. ATG12464982464993Non coding
200. AAG11468358468368Non coding
201. AAG12472394472405Non coding
202. AAG13475982475994Non coding
203. CAA12476228476239Non coding
204. AGA15477040477054Non coding
205. ACT16481693481708Non coding
206. TTC13484014484026Non coding
207. CAT12485487485498Non coding
208. CTC12489908489919Non coding
209. TTC13490529490541Non coding
210. ACT15491102491116Non coding
211. TGA11494303494313Non coding
212. AGG13495372495384Non coding
213. TCA11497558497568Non coding
214. TCT12499579499590Non coding
215. CTG11500952500962Non coding
216. TAA14501044501057Non coding
217. TAT13504200504212Coding-Non coding
218. CGA12504360504371Coding
219. AGA13504467504479Coding
220. AAC12505085505096Coding
221. TTC12510779510790Non coding
222. TTC12522274522285Non coding
223. ATC12526446526457Non coding
224. CCT12526754526765Non coding
225. AAG11527685527695Non coding
226. AGA12530042530053Non coding
227. TGA12534658534669Non coding
228. CTT12538097538108Non coding
229. GAA12539251539262Non coding
230. TCC12542801542812Non coding
231. GTA11543995544005Non coding
232. AGA12545237545248Coding
233. AGG11545853545863Non coding
234. CTT11546206546216Non coding
235. GAA12546347546358Non coding
236. CAC11551994552004Non coding
237. AAG13556478556490Non coding
238. AGC11559854559864Non coding
239. CTT12561688561699Non coding
240. GAA12567647567658Non coding
241. CAA11568239568249Non coding
242. GAA11570159570169Non coding
243. GCC11570904570914Non coding
244. AAG11572631572641Non coding
245. GCC13573210573222Non coding
246. GAA13578176578188Non coding
247. GAA14580059580072Non coding
248. AGA12580232580243Non coding
249. TTA12580792580803Non coding
250. TTA11585411585421Non coding
251. AAG11588482588492Non coding
252. GGT11589921589931Coding
253. AAG12590797590808Non coding
254. CTT13596432596444Non coding
255. TGT12598722598733Non coding
256. CTT11599476599486Non coding
257. TCT12600290600301Non coding
258. TGT12604824604835Non coding
259. ACT13610563610575Non coding
260. ATA17612197612213Non coding
261. GAA11613073613083Non coding
262. CTT12613363613374Non coding
263. CTT14613478613491Non coding
264. GAA12616403616414Non coding
265. TCT12618509618520Non coding
266. GAA12619266619277Non coding
267. TCT12619424619435Non coding
268. AAG12624430624441Non coding
269. ACC13627135627147Coding
270. CAT11633581633591Coding
271. ATA12635057635068Non coding
272. CAT12635107635118Non coding
273. CTT12635340635351Non coding
274. ATA15635367635381Non coding
275. AGA12641444641455Non coding
276. TTC12643793643804Non coding
277. AGA17643980643996Non coding
278. TTA16644272644287Non coding
279. TAA11646582646592Non coding
280. TTA14649109649122Non coding
281. CTT15650528650542Non coding
282. ACC13654045654057Non coding
283. CGT11656975656985Non coding
284. GAG12662510662521Non coding
285. GTC12663831663842Non coding
286. GTT11664104664114Non coding
287. AAG13665808665820Non coding
288. TAG11665963665973Non coding
289. TGA11666974666984Non coding
290. CTT13667693667705Non coding
291. AAG11669793669803Non coding
292. CAG11675070675080Non coding
293. GAA11676815676825Non coding
294. TAT12677336677347Non coding
295. AGA12678064678075Non coding
296. TAA12678856678867Non coding
297. TAT15679978679992Non coding
298. TAA12681380681391Non coding
299. TCT13681404681416Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.