MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.83 kb   Average length of SSR  : 12.68 bp
Coding      : 20     Non-Coding           : 798   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. GTTC11200210Non coding
2. CAGC12431442Non coding
3. TCCT1214921503Non coding
4. AACT1240114022Non coding
5. CCTA2140254045Non coding
6. AACT1240884099Non coding
7. AAAG1291089119Non coding
8. CATA111023710247Non coding
9. TGAG121125511266Non coding
10. TGGA121336113372Non coding
11. AAAG131404214054Non coding
12. TTTC121520615217Non coding
13. CTTT111548715497Non coding
14. AGCC121607616087Non coding
15. GAAG121686316874Non coding
16. GCAA111727317283Non coding
17. ATCT111752817538Non coding
18. AGTC121870618717Non coding
19. TGAA111968719697Non coding
20. ATTG112174321753Non coding
21. GATC112177121781Non coding
22. GACT122728227293Non coding
23. CTCA123014930160Non coding
24. TCCC133254332555Non coding
25. CTTT113407234082Non coding
26. CTTT113454734557Non coding
27. CTTT113525435264Non coding
28. AGTA123701737028Non coding
29. TTAG113731337323Non coding
30. CTTT123860038611Non coding
31. CTTG113884938859Non coding
32. AGAT114032440334Non coding
33. TCTA124109041101Non coding
34. AATC124273342744Non coding
35. AGAA124304843059Non coding
36. TATT125263852649Non coding
37. CCTC125270452715Non coding
38. CCTC125321953230Non coding
39. AAAG125508055091Non coding
40. TTTC125763957650Non coding
41. CTAT125911759128Non coding
42. CTAG126068660697Non coding
43. CAAG126186761878Non coding
44. CCTT116795667966Non coding
45. CGAT117136971379Non coding
46. GAAA117795177961Non coding
47. ATTA157864378657Non coding
48. CATT127994879959Non coding
49. TAAT128023380244Non coding
50. AAAC138541185423Coding
51. CTTT168894288957Non coding
52. TTCT128963589646Non coding
53. AGAA119209092100Non coding
54. TCCT119307693086Non coding
55. TTCA119732697336Non coding
56. AGCT129756897579Non coding
57. TGGG119829398303Non coding
58. TCGA11101055101065Non coding
59. CTTT12103813103824Non coding
60. AGAT13109683109695Non coding
61. AATG12116220116231Non coding
62. GAAT11120703120713Non coding
63. CCTT16121583121598Non coding
64. ATTC12125434125445Non coding
65. TTCA11127275127285Non coding
66. GAAA12128210128221Non coding
67. TTTC12133816133827Non coding
68. AGTG11133915133925Non coding
69. CTAG11134010134020Non coding
70. TACT12135405135416Non coding
71. TTCT11138966138976Non coding
72. TAAG13142492142504Non coding
73. CTTT11146908146918Non coding
74. TAAC11150846150856Non coding
75. AGCA11153027153037Non coding
76. TCAT12153308153319Non coding
77. TAAC12153805153816Non coding
78. CCTT12153941153952Non coding
79. TTTG12154875154886Non coding
80. TTCC13159680159692Non coding
81. AAAG19163290163308Non coding
82. TGTT12166201166212Non coding
83. CAAT12170927170938Non coding
84. TTTC12170998171009Non coding
85. CTAT15175220175234Non coding
86. CTTT12175427175438Non coding
87. TGAC12178663178674Non coding
88. TCAA12180762180773Non coding
89. TTTG12181260181271Non coding
90. AAAT11181645181655Non coding
91. AAAC12182579182590Non coding
92. TAAG11184247184257Non coding
93. GATC13184459184471Non coding
94. CCCG11187152187162Non coding
95. GTAG12187433187444Non coding
96. CTTT12187717187728Non coding
97. CAAG11187800187810Non coding
98. GATG11192349192359Non coding
99. CGAT16193070193085Non coding
100. ATCT11194974194984Non coding
101. ATGG12196370196381Non coding
102. TCTT11196430196440Non coding
103. AGTA12196681196692Non coding
104. ATAG11197194197204Non coding
105. CAAG12198957198968Non coding
106. GGCC11202757202767Non coding
107. CTTT11205078205088Non coding
108. GAAA16212679212694Non coding
109. TGAA12212816212827Non coding
110. AACC11215434215444Non coding
111. TAAG12219772219783Non coding
112. AAAT11221656221666Non coding
113. GAAA11223208223218Non coding
114. TTCT12223966223977Non coding
115. TAAA13225796225808Non coding
116. TGGT12229275229286Non coding
117. CCTA11233423233433Non coding
118. ACAT12233505233516Non coding
119. GCTT11239486239496Non coding
120. CTTT12239923239934Non coding
121. TCTG12240634240645Non coding
122. TTGT11244694244704Non coding
123. GGAA11251231251241Non coding
124. CTTT13253135253147Non coding
125. CAAG11257693257703Non coding
126. AGGA13257950257962Non coding
127. CTTT11264088264098Non coding
128. TTTC12265686265697Non coding
129. GGGA12266426266437Non coding
130. GCTA12267845267856Non coding
131. CTTT11269928269938Non coding
132. TTTC17270575270591Non coding
133. AGAA13272550272562Non coding
134. AAAG12277687277698Non coding
135. GAAA12277755277766Non coding
136. ATAA12279765279776Non coding
137. TCCC12282833282844Non coding
138. AGAT12286544286555Non coding
139. TTCG11289907289917Non coding
140. TGGC11290974290984Non coding
141. AGAC11294168294178Non coding
142. AAAG12294348294359Non coding
143. CACT11294842294852Non coding
144. CTAT12296221296232Non coding
145. GAAA12298559298570Coding-Non coding
146. TTTC11301475301485Non coding
147. TCTT12301627301638Non coding
148. ATTG11303825303835Non coding
149. TTAA11304175304185Non coding
150. AAAG12304511304522Non coding
151. TTAG11304733304743Non coding
152. ACTT11304841304851Non coding
153. CCTA12304977304988Non coding
154. CTTG12306904306915Non coding
155. CTTT11312143312153Non coding
156. GAAA12314089314100Non coding
157. TCTA13319102319114Non coding
158. GTTT11319558319568Non coding
159. TGAA11321202321212Non coding
160. TCGT12323688323699Non coding
161. TCAA13328140328152Non coding
162. CCTT12329493329504Non coding
163. GAAA12331377331388Non coding
164. AGCA11334187334197Non coding
165. AAAG11334242334252Non coding
166. GGAA13337200337212Non coding
167. GCTC12340778340789Non coding
168. AGGC16343431343446Non coding
169. CGTA13346165346177Non coding
170. CTTT13346254346266Non coding
171. GGGA12347095347106Non coding
172. GAAC16347583347598Non coding
173. AAAG11349145349155Non coding
174. CGTA13349993350005Non coding
175. TTAG12352586352597Non coding
176. TAGA13353656353668Non coding
177. CTTC12355165355176Non coding
178. GAAG13357118357130Non coding
179. CAAT12358377358388Non coding
180. TGGG12359199359210Non coding
181. CATT12359273359284Non coding
182. ACTA12363350363361Non coding
183. TCGG11375472375482Non coding
184. TAGA11382033382043Non coding
185. GGCT13384680384692Non coding
186. AAAG12386516386527Non coding
187. TGAA11388936388946Non coding
188. TAAA11391102391112Non coding
189. CTTA11393442393452Non coding
190. AGCG13398809398821Non coding
191. TCTA11400905400915Non coding
192. GGTG11403634403644Non coding
193. TAGC13405881405893Non coding
194. TAGA12407484407495Non coding
195. TCTT11420317420327Non coding
196. ACCC12422187422198Non coding
197. CTTA12427551427562Non coding
198. TTCC11431467431477Non coding
199. TCCA11432198432208Non coding
200. ATTT11435405435415Non coding
201. CAGA12437107437118Non coding
202. AAAG13441011441023Non coding
203. GTAG13445168445180Non coding
204. GGGC13447002447014Non coding
205. GATA12447392447403Non coding
206. TGGG12448661448672Non coding
207. TTGC12450459450470Non coding
208. GAAA16452359452374Non coding
209. TACA11452398452408Non coding
210. CCTT16452974452989Non coding
211. TTTC13453286453298Non coding
212. TAGG11454827454837Non coding
213. CTTT11456209456219Non coding
214. TTCC11458128458138Non coding
215. CAAG11460506460516Non coding
216. CCTA12468340468351Non coding
217. GTTT11468908468918Non coding
218. GGAA11469400469410Non coding
219. AGAA11470221470231Non coding
220. GTAG12473423473434Non coding
221. TTAC11473857473867Non coding
222. TTTA12479004479015Non coding
223. AAAG11480994481004Non coding
224. GGGC11483621483631Non coding
225. TTTC12487460487471Non coding
226. GGAT12487685487696Non coding
227. TTCT11488497488507Non coding
228. GAAT15488914488928Non coding
229. AAAC11489519489529Non coding
230. CCTC12492734492745Non coding
231. TCTT16495220495235Non coding
232. ATCT13499733499745Non coding
233. TCGG12501622501633Non coding
234. TACA12506704506715Non coding
235. ACTT11507481507491Non coding
236. AAAG11509870509880Non coding
237. TCAA13514047514059Non coding
238. TTTC12519873519884Non coding
239. GAAA11520479520489Non coding
240. ATAA12521458521469Non coding
241. TTGC11525198525208Non coding
242. GGAA12528546528557Non coding
243. TACG12530834530845Non coding
244. AAGG11531126531136Non coding
245. CTTA12531391531402Non coding
246. TTTC12537273537284Non coding
247. TAGC11538840538850Non coding
248. TTTC13539268539280Non coding
249. AAAG11541682541692Non coding
250. ACCC11547614547624Non coding
251. CCTA11547628547638Non coding
252. CTTT16548905548920Non coding
253. TTCA16556192556207Non coding
254. GATC11558375558385Coding
255. CTTG12562398562409Non coding
256. TTGG11563985563995Non coding
257. GCCT11564015564025Non coding
258. AAAG11564234564244Non coding
259. CTTT16564377564392Non coding
260. AAGC12565469565480Non coding
261. AAGG12566437566448Non coding
262. GAAA11566572566582Non coding
263. GAAA11566911566921Non coding
264. ATAA12569745569756Non coding
265. GACT11571939571949Non coding
266. TTTG12575052575063Non coding
267. TTTG12577520577531Non coding
268. TAGA12579173579184Non coding
269. CTTT11579599579609Non coding
270. GTAA12580144580155Non coding
271. AAGA11580567580577Non coding
272. GTAA11580680580690Non coding
273. GAAA13580942580954Non coding
274. AAAG11583011583021Non coding
275. CATA11583289583299Non coding
276. GCAT12586245586256Non coding
277. CTTT12586650586661Non coding
278. GAAA11587524587534Non coding
279. CAAG12587702587713Non coding
280. AAGA12591592591603Non coding
281. CGAT12591803591814Non coding
282. AAAC11593229593239Non coding
283. AGAA12593551593562Non coding
284. TCCA11603416603426Coding
285. AAAT12603914603925Non coding
286. ATGT11604565604575Non coding
287. CGAG13605610605622Non coding
288. TGAA16608536608551Non coding
289. CATA11612616612626Non coding
290. AAGA11613105613115Non coding
291. AGAA12613753613764Non coding
292. TAAC11618000618010Non coding
293. TGTC12618135618146Non coding
294. AAAG12618832618843Non coding
295. TCTT12621784621795Non coding
296. CAAC13624996625008Non coding
297. GAAA11625304625314Non coding
298. GCAT11629370629380Non coding
299. GAAT11631080631090Non coding
300. AAAG12635035635046Non coding
301. ATGA12635704635715Non coding
302. AAAG12643619643630Non coding
303. GAAA11644443644453Non coding
304. CAAA12644515644526Non coding
305. GAAA11646323646333Non coding
306. TAAA11649123649133Non coding
307. AAAG11653239653249Non coding
308. GCAA11655828655838Non coding
309. GGAC11658283658293Non coding
310. CATT13658807658819Non coding
311. GAAA12666145666156Non coding
312. GGAT13667680667692Non coding
313. ATTC11668958668968Non coding
314. TCTA12671727671738Non coding
315. AATC12671880671891Non coding
316. AAGG12673040673051Non coding
317. GAAA13675896675908Non coding
318. TTTC11676348676358Non coding
319. CAGT11676539676549Non coding
320. GATT11676553676563Non coding
321. GATT11677021677031Non coding
322. AAAT11677229677239Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.