MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Asclepias syriaca (NC_022796 682498 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 110     Density of SSR      : 1SSR/ 6.2 kb   Average length of SSR  : 12.8 bp
Coding      : 2     Non-Coding           : 108   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 10 26 59 11 3 110
IMPERFECT 6 90 299 322 63 41 821
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTGA)3121846818479Non coding
2. (ATAG)3122082420835Non coding
3. (CTTT)3123438834399Non coding
4. (AAGA)3123618236193Non coding
5. (GAAT)3125615256163Non coding
6. (TACT)3126397863989Non coding
7. (GTAG)3126419464205Non coding
8. (ATTA)3127864678657Non coding
9. (TTTC)3129606596076Non coding
10. (CCTT)312121583121594Non coding
11. (CTTG)312134421134432Non coding
12. (AGAA)312156204156215Non coding
13. (AAAG)312163290163301Non coding
14. (CGAT)312193074193085Non coding
15. (ACTC)312203831203842Non coding
16. (AGAA)312209341209352Non coding
17. (AAGA)312212681212692Non coding
18. (AGAA)312248132248143Non coding
19. (AGAA)312249457249468Non coding
20. (CAAT)312267579267590Non coding
21. (TTTC)312270575270586Non coding
22. (TTCC)312270613270624Non coding
23. (GACC)312288010288021Non coding
24. (TTGC)312334129334140Non coding
25. (GAAC)312347583347594Non coding
26. (AAGC)312352485352496Non coding
27. (GAAA)312366570366581Non coding
28. (AATC)312377536377547Non coding
29. (TATC)312395876395887Non coding
30. (TCTA)312398727398738Non coding
31. (AGAA)312400888400899Non coding
32. (GAGC)312436420436431Non coding
33. (GGCC)312437306437317Non coding
34. (TTTC)312447544447555Non coding
35. (ATCA)312475243475254Non coding
36. (CTTA)312479047479058Non coding
37. (TCTT)312495220495231Non coding
38. (TAAC)312498300498311Non coding
39. (CATT)312504334504345Coding
40. (GTAT)312506473506484Non coding
41. (CCTT)312510930510941Non coding
42. (AAGA)312513722513733Non coding
43. (AGAA)312521689521700Non coding
44. (ATCC)312534366534377Non coding
45. (GATA)312546388546399Non coding
46. (TGAA)312548729548740Non coding
47. (CTTT)312548905548916Non coding
48. (TTCA)312556192556203Non coding
49. (TCTT)312564380564391Non coding
50. (CCAT)312571240571251Non coding
51. (AAGC)312587755587766Non coding
52. (GGCG)312590478590489Non coding
53. (TGAA)312608536608547Non coding
54. (AATC)312612267612278Non coding
55. (CTTG)312662916662927Non coding
56. (TTCA)312663309663320Non coding
57. (AATA)312668431668442Non coding
58. (CCTT)312676246676257Non coding
59. (TTCT)312682042682053Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.