MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Bartramia pomiformis (NC_024519 106198 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 47     Density of SSR      : 1SSR/ 2.21 kb   Average length of SSR  : 13.94 bp
Coding      : 8     Non-Coding           : 39   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 7 21 6 11 1 1 47
IMPERFECT 19 40 36 57 8 3 163
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AT)612194205Non coding
2. (TTA)412243254Non coding
3. (AT)612276287Non coding
4. (AT)612463474Non coding
5. (AATT)312793804Non coding
6. (AT)8161099011005Non coding
7. (ATAG)3121108911100Non coding
8. (T)14141145311466Coding
9. (AT)7141277512788Non coding
10. (TAA)4121348813499Coding
11. (AT)6121449714508Non coding
12. (TTTA)3121533115342Coding
13. (A)12121640016411Coding
14. (T)12121797417985Coding
15. (AT)6122018020191Non coding
16. (T)19192168021698Non coding
17. (CATA)3122552125532Non coding
18. (AT)6122604526056Non coding
19. (TA)6122606426075Non coding
20. (AT)6122757627587Non coding
21. (TA)7142815028163Non coding
22. (AT)7142918529198Non coding
23. (ATAA)3122996229973Non coding
24. (A)12123924039251Non coding
25. (ATA)4124011140122Non coding
26. (AAT)4124032040331Non coding
27. (T)12124095540966Non coding
28. (AT)21424176641807Non coding
29. (AATA)3125414554156Non coding
30. (AACAA)3155468954703Non coding
31. (AT)6125490654917Non coding
32. (T)13135541655428Non coding
33. (AT)7145751157524Non coding
34. (AT)6126456164572Non coding
35. (GAA)4126552565536Non coding
36. (AT)6127078870799Non coding
37. (ATTT)3127138171392Coding
38. (TTA)4127241872429Coding
39. (CT)6127397073981Non coding
40. (AT)9187400574022Non coding
41. (ATTT)3127873278743Non coding
42. (TAGA)3129140491415Coding-Non coding
43. (AT)6129172291733Non coding
44. (AAGA)3129453194542Coding
45. (AAAC)3129598195992Non coding
46. (TA)612100010100021Non coding
47. (TTTTTC)318104674104691Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.