MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Batis maritima (NC_024429 403930 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 81     Density of SSR      : 1SSR/ 4.99 kb   Average length of SSR  : 12.36 bp
Coding      : 6     Non-Coding           : 75   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 10 8 11 51 1 0 81
IMPERFECT 15 64 149 188 38 15 469
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCCCC)31553895403Non coding
2. (GGT)41282538264Non coding
3. (ATTT)41693879402Non coding
4. (CGCC)3121609216103Non coding
5. (TTTA)3121662316634Non coding
6. (TCTA)3121666416675Non coding
7. (AG)6122013520146Non coding
8. (T)12122170021711Non coding
9. (AGAT)3123603636047Non coding
10. (CAAG)3123668336694Non coding
11. (AAGA)3124000340014Non coding
12. (T)13135079450806Non coding
13. (G)12125619656207Non coding
14. (TAAG)3125661656627Non coding
15. (TCCC)3125685756868Non coding
16. (TGCC)3125998459995Non coding
17. (AATG)3126566465675Non coding
18. (AAGA)3126690266913Non coding
19. (CTTG)3126734467355Non coding
20. (AT)7146839468407Non coding
21. (GAAA)3127936479375Non coding
22. (T)14148225982272Non coding
23. (A)12128499385004Non coding
24. (CT)7149683896851Non coding
25. (GAAA)312103409103420Non coding
26. (TCT)412106366106377Non coding
27. (CGCC)312110486110497Non coding
28. (AGAA)312115504115515Non coding
29. (TA)612123042123053Non coding
30. (TGT)412129207129218Non coding
31. (GCAA)312129973129984Non coding
32. (GAT)412139443139454Non coding
33. (TAA)515146748146762Non coding
34. (CTTT)312148173148184Non coding
35. (T)1717152315152331Coding
36. (CTTA)312153800153811Non coding
37. (A)1212160162160173Coding
38. (TTG)412171408171419Non coding
39. (TTCC)312171900171911Non coding
40. (AATG)312182526182537Coding
41. (TTAC)312192690192701Non coding
42. (TCCT)312202172202183Coding
43. (TTTA)312225059225070Non coding
44. (CCTT)312225780225791Non coding
45. (TGAA)312234058234069Non coding
46. (A)1212234717234728Non coding
47. (TA)612244162244173Non coding
48. (ATTC)312253908253919Non coding
49. (CGAT)312255358255369Non coding
50. (TA)612260798260809Non coding
51. (T)1212266339266350Non coding
52. (CTGA)312266956266967Non coding
53. (TATC)312268870268881Non coding
54. (TCTT)312269038269049Non coding
55. (TTAA)312270027270038Non coding
56. (CCTT)312312279312290Coding
57. (TAG)412316743316754Non coding
58. (TTTG)312318017318028Non coding
59. (GCAG)312323086323097Non coding
60. (CTGC)312324710324721Coding
61. (AT)612329839329850Non coding
62. (CTTA)312333796333807Non coding
63. (AGAA)312349288349299Non coding
64. (TAA)412351422351433Non coding
65. (TGCT)312353578353589Non coding
66. (ATT)515353612353626Non coding
67. (TGAA)312354962354973Non coding
68. (TTAT)312361929361940Non coding
69. (AACC)312362302362313Non coding
70. (ATGA)312370172370183Non coding
71. (TCGG)312371183371194Non coding
72. (TAGC)312376124376135Non coding
73. (ATTT)312378838378849Non coding
74. (AGA)412381140381151Non coding
75. (T)1212383402383413Non coding
76. (AAG)412391441391452Non coding
77. (TCAA)312394590394601Non coding
78. (GTGA)312397547397558Non coding
79. (ACTG)312400011400022Non coding
80. (GCTA)312400871400882Non coding
81. (AT)816401899401914Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.