MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Beta macrocarpa (NC_015994 385220 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 69     Density of SSR      : 1SSR/ 5.58 kb   Average length of SSR  : 12.62 bp
Coding      : 5     Non-Coding           : 63   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 2 12 42 8 2 69
IMPERFECT 14 50 148 213 36 12 473
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTTT)31255695580Non coding
2. (TCTG)3121228812299Non coding
3. (TA)6122269822709Non coding
4. (AAAC)3122282122832Non coding
5. (CTC)4122745327464Non coding
6. (AAGT)3123793537946Non coding
7. (TCGC)3123862838639Non coding
8. (CTAGT)3154731247326Coding-Non coding
9. (TTGA)3125037250383Non coding
10. (TTGT)3125130751318Non coding
11. (AAG)4125307953090Non coding
12. (TTTC)3125445654467Non coding
13. (AAGT)3126052560536Non coding
14. (CATTT)3156264162655Non coding
15. (AGA)4126302063031Non coding
16. (CTTC)3127617976190Non coding
17. (ATTC)3128353583546Non coding
18. (CTT)4128384983860Non coding
19. (GCCG)3129436794378Non coding
20. (AAT)412107430107441Non coding
21. (TCGA)312111473111484Non coding
22. (CTTG)312111831111842Non coding
23. (TAAG)312115530115541Non coding
24. (CTATA)315123343123357Non coding
25. (AAG)412126269126280Non coding
26. (ACTT)312132027132038Non coding
27. (TCATT)315133978133992Non coding
28. (TCTTG)315134311134325Non coding
29. (TCTG)312140526140537Non coding
30. (CTTT)312152336152347Coding
31. (A)1313163885163897Non coding
32. (TCTAT)315164620164634Non coding
33. (T)1212165244165255Non coding
34. (CAAG)312165607165618Non coding
35. (TACACA)318177313177330Non coding
36. (CTTT)312182465182476Non coding
37. (GTCTG)315196854196868Non coding
38. (TACG)312202711202722Non coding
39. (T)1212204853204864Non coding
40. (GAA)412205119205130Non coding
41. (AAT)515218792218806Non coding
42. (TCT)412219505219516Non coding
43. (CGCC)312224891224902Non coding
44. (CTT)412224966224977Non coding
45. (TTAG)312228210228221Non coding
46. (TCGG)312230172230183Non coding
47. (CATT)312234524234535Non coding
48. (AAAG)312235982235993Non coding
49. (CTTT)312236196236207Non coding
50. (AGAA)312243848243859Non coding
51. (CTTT)312255696255707Non coding
52. (TCTG)312262418262429Non coding
53. (CTTT)312274229274240Coding
54. (TTTC)312291103291114Non coding
55. (TAGA)312295504295515Non coding
56. (TCTT)312300923300934Non coding
57. (CGAT)312310875310886Coding
58. (GCAG)312318352318363Non coding
59. (TAG)515319802319816Coding
60. (AAAG)312338986338997Non coding
61. (TACACA)318341334341351Non coding
62. (TC)612363634363645Non coding
63. (AAGAA)315367875367889Coding
64. (AAGA)312376915376926Non coding
65. (TAG)412377620377631Non coding
66. (TTCC)312379454379465Non coding
67. (TGAG)312383831383842Non coding
68. (ATGA)312383856383867Non coding
69. (AAGA)312384200384211Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.