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Organism:
Beta vulgaris subsp. vulgaris
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(NC_002511 , 368801 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
68
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Density of SSR
:
1SSR/
5.42
kb
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Average length of SSR
:
12.59
bp
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Coding
:
6
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Non-Coding
:
61
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Coding and Non-Coding
:
1
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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5
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2
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11
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41
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7
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2
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68
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (CAAG)3 | 12 | 3123 | 3134 | Non coding |
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2.
| (CTTT)3 | 12 | 53775 | 53786 | Non coding |
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3.
| (CTGC)3 | 12 | 74411 | 74422 | Non coding |
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4.
| (ATCG)3 | 12 | 81882 | 81893 | Coding |
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5.
| (AAGA)3 | 12 | 91832 | 91843 | Non coding |
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6.
| (ATCT)3 | 12 | 97246 | 97257 | Non coding |
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7.
| (AGAA)3 | 12 | 101647 | 101658 | Non coding |
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8.
| (AAAG)3 | 12 | 118511 | 118522 | Coding |
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9.
| (ACAG)3 | 12 | 130540 | 130551 | Non coding |
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10.
| (TTTC)3 | 12 | 134960 | 134971 | Non coding |
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11.
| (AAGT)3 | 12 | 141011 | 141022 | Non coding |
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12.
| (CTTC)3 | 12 | 156651 | 156662 | Non coding |
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13.
| (ATTC)3 | 12 | 163989 | 164000 | Non coding |
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14.
| (GCCG)3 | 12 | 174819 | 174830 | Non coding |
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15.
| (AAGA)3 | 12 | 188213 | 188224 | Non coding |
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16.
| (TTCC)3 | 12 | 190746 | 190757 | Non coding |
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17.
| (TGAG)3 | 12 | 195121 | 195132 | Non coding |
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18.
| (ATGA)3 | 12 | 195146 | 195157 | Non coding |
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19.
| (AAGA)3 | 12 | 195490 | 195501 | Non coding |
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20.
| (ACTT)3 | 12 | 202155 | 202166 | Non coding |
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21.
| (TCTG)3 | 12 | 210652 | 210663 | Non coding |
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22.
| (AAAC)3 | 12 | 221398 | 221409 | Non coding |
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23.
| (AAGT)3 | 12 | 236511 | 236522 | Non coding |
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24.
| (TCGC)3 | 12 | 237204 | 237215 | Non coding |
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25.
| (TTGA)3 | 12 | 248945 | 248956 | Non coding |
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26.
| (TTGT)3 | 12 | 249880 | 249891 | Non coding |
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27.
| (ACTT)3 | 12 | 254815 | 254826 | Non coding |
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28.
| (CAAG)3 | 12 | 258505 | 258516 | Non coding |
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29.
| (TCGA)3 | 12 | 258863 | 258874 | Non coding |
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30.
| (CTTT)3 | 12 | 266704 | 266715 | Non coding |
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31.
| (TACG)3 | 12 | 286930 | 286941 | Non coding |
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32.
| (CGCC)3 | 12 | 309099 | 309110 | Non coding |
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33.
| (TTAG)3 | 12 | 312420 | 312431 | Non coding |
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34.
| (TCGG)3 | 12 | 314382 | 314393 | Coding |
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35.
| (CATT)3 | 12 | 318734 | 318745 | Non coding |
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36.
| (AAAG)3 | 12 | 320192 | 320203 | Non coding |
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37.
| (CTTT)3 | 12 | 320406 | 320417 | Non coding |
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38.
| (AGAA)3 | 12 | 328058 | 328069 | Non coding |
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39.
| (CTTT)3 | 12 | 339906 | 339917 | Non coding |
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40.
| (TCTG)3 | 12 | 346625 | 346636 | Non coding |
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41.
| (CTTT)3 | 12 | 358656 | 358667 | Coding |
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Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
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