MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.86 kb   Average length of SSR  : 12.38 bp
Coding      : 27     Non-Coding           : 562   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CCAAAG171189911915Non coding
2. CCTATT175449054506Non coding
3. GTTTTA176920569221Non coding
4. CTTTTT19153916153934Non coding
5. TTCTAT17160700160716Non coding
6. TTTCTT18170897170914Non coding
7. TGAAAG18173952173969Non coding
8. TGGAAA18174291174308Non coding
9. ATCAGT18216166216183Non coding
10. TGCGTT19220428220446Non coding
11. GAGATA18228379228396Non coding
12. ACTAAT23264858264880Non coding
13. TTCCAG17278068278084Non coding
14. AATATA18283965283982Non coding
15. TACAAG18321420321437Non coding
16. TTCTTT19357439357457Non coding
17. CTTTTT19405555405573Non coding
18. CTATTG18424790424807Non coding
19. ATTGAT24439686439709Coding
20. TCGCTC17465431465447Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.