MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.86 kb   Average length of SSR  : 12.38 bp
Coding      : 27     Non-Coding           : 562   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TA1111331143Non coding
2. AGA1224222433Non coding
3. TAAC1125442554Non coding
4. TTTC1239863997Non coding
5. AAAG1144854495Non coding
6. GTTTT1448634876Non coding
7. ACTT1150835093Non coding
8. TTTC1253775388Non coding
9. ATT1157855795Non coding
10. CAAT1158615871Non coding
11. GAAA1263496360Non coding
12. CA1473157328Non coding
13. GA1278017812Non coding
14. AAGA1391529164Non coding
15. GAA1293959406Non coding
16. CCTT111101311023Non coding
17. CTTT131186911881Non coding
18. CCAAAG171189911915Non coding
19. AT111273912749Non coding
20. CTT111445214462Non coding
21. AGC121595315964Non coding
22. TTCC121694516956Non coding
23. CCT111708717097Non coding
24. CT111732317333Non coding
25. CAG121770017711Non coding
26. TTTC111842918439Non coding
27. GGAA121878518796Non coding
28. AT152030920323Non coding
29. CT112092420934Non coding
30. CCGA112145721467Non coding
31. TA122165521666Non coding
32. CTTT122167821689Non coding
33. GGGA122186721878Non coding
34. GGT112247922489Non coding
35. AT132425624268Non coding
36. TCTTT142526725280Non coding
37. AAG122565225663Non coding
38. GAT112663926649Non coding
39. CTA122825828269Non coding
40. GAA122864428655Non coding
41. AGA122890628917Non coding
42. GCA122928829299Non coding
43. CT113016930179Non coding
44. GAA133078730799Non coding
45. TCCT133088930901Non coding
46. GATTG153236532379Non coding
47. CTTT133242032432Non coding
48. ACTC113251432524Non coding
49. TCT123315733168Non coding
50. ATTC173329633312Non coding
51. ACT113341233422Non coding
52. GTG123500635017Non coding
53. CCTT113650836518Non coding
54. TC123885238863Non coding
55. CATT113968739697Non coding
56. TTAC124022140232Non coding
57. AAAG114220742217Non coding
58. ATACT144251042523Non coding
59. TTCTA194341043428Non coding
60. GAAA124354643557Non coding
61. GATG134508045092Non coding
62. GAAG124519045201Non coding
63. AATG114635346363Non coding
64. AAGC114640546415Non coding
65. TCCTT154672446738Non coding
66. TGAA124712647137Non coding
67. GA124735747368Non coding
68. GGCA154738047394Non coding
69. AATC114919249202Non coding
70. TTTAT204931649335Non coding
71. CTT134970049712Non coding
72. AAGA134979649808Non coding
73. AT115003150041Non coding
74. TA115063650646Non coding
75. GAA125073450745Non coding
76. CTT125092650937Non coding
77. CCTT125128351294Non coding
78. GGAT125198051991Non coding
79. TCCT125259752608Non coding
80. CTA125262652637Non coding
81. TATTT145268852701Non coding
82. TTTTG155361853632Coding
83. CCTATT175449054506Non coding
84. ACTT125484654857Non coding
85. TG115641856428Non coding
86. TCGA115654056550Non coding
87. CTA135774857760Non coding
88. TGAA115791557925Non coding
89. GA165913659151Non coding
90. CTTA135999860010Non coding
91. AGA116005260062Non coding
92. TCT116047560485Non coding
93. ACCC126082360834Non coding
94. AG116151661526Non coding
95. TTCC126190861919Non coding
96. GGAG166217662191Non coding
97. CTT126268662697Non coding
98. ATG136315863170Non coding
99. AT146396263975Non coding
100. ATCT126445864469Non coding
101. AG116530365313Non coding
102. AATC126875468765Non coding
103. GTTTTA176920569221Non coding
104. TTCC116996969979Non coding
105. CAT117024270252Non coding
106. CAG117050870518Non coding
107. AAAG117125371263Non coding
108. TAGC117135371363Non coding
109. GTA117297072980Non coding
110. GATG167316273177Non coding
111. AGA127428674297Coding
112. TTCT127472674737Non coding
113. GAAA137511875130Non coding
114. TATCG147620076213Non coding
115. TC117753577545Non coding
116. CCTT127909779108Non coding
117. GCTT117925279262Non coding
118. TTG117934079350Non coding
119. TC128135781368Non coding
120. TTCC118247582485Non coding
121. GA118297182981Non coding
122. CTTC138386783879Non coding
123. AG118660586615Non coding
124. A128795187962Non coding
125. AG118893988949Non coding
126. TAA129012190132Non coding
127. ATA129042090431Non coding
128. AG129101791028Non coding
129. GA119118191191Non coding
130. CTT129337493385Non coding
131. TC119363293642Non coding
132. CAGG129580195812Non coding
133. AAGA119599696006Non coding
134. AAGA169692596940Non coding
135. CTT119972899738Non coding
136. A14100084100097Non coding
137. AT11101137101147Non coding
138. AAAG12104507104518Non coding
139. TA14105283105296Non coding
140. AGA12106346106357Coding
141. TAT11106970106980Non coding
142. GGTT13108296108308Non coding
143. AGTAT14108686108699Non coding
144. TAA12110002110013Non coding
145. GGAA12110951110962Non coding
146. AAG12111172111183Non coding
147. TCC11112919112929Non coding
148. GCT11113822113832Non coding
149. ACCC11115370115380Coding
150. AATAG14115883115896Coding
151. AGA11116078116088Non coding
152. CAT11116257116267Coding
153. A13117303117315Non coding
154. GTT11117451117461Non coding
155. GGGA11122792122802Non coding
156. AT15123357123371Non coding
157. GA14123636123649Non coding
158. GCCT12123927123938Non coding
159. GTCTC16124150124165Non coding
160. CTTTG14124397124410Non coding
161. AAAG11124995125005Non coding
162. CTAA11125883125893Non coding
163. TTTC11126039126049Non coding
164. AGA13126562126574Non coding
165. CTT12126887126898Non coding
166. ACCC12127084127095Non coding
167. CGT13127746127758Non coding
168. AAAG11128162128172Non coding
169. CTTT11128682128692Non coding
170. ACC13128997129009Non coding
171. TA11129453129463Coding
172. CGT11131383131393Non coding
173. AGAA11131596131606Non coding
174. TTC11131869131879Coding
175. ATG11132582132592Non coding
176. GGAC11132721132731Non coding
177. CATT13133510133522Non coding
178. CAGAC15133596133610Non coding
179. CCCA13134100134112Non coding
180. CATC12134360134371Coding
181. GAA12134650134661Non coding
182. ATT12135441135452Non coding
183. TCT12136228136239Non coding
184. TGA11136539136549Non coding
185. AGGT11136862136872Non coding
186. GAT11137540137550Non coding
187. TGCT12141477141488Non coding
188. GGTA12142694142705Non coding
189. AG11143468143478Non coding
190. CTA12145104145115Non coding
191. TTG12145890145901Non coding
192. CTT11146574146584Non coding
193. CTG12146756146767Non coding
194. AGGA12147042147053Non coding
195. AGGA11148446148456Non coding
196. GATA11149513149523Non coding
197. TAGC12149624149635Non coding
198. TAT12150899150910Non coding
199. TGGAA14151613151626Non coding
200. ATT12153062153073Non coding
201. CT13153203153215Non coding
202. TAAC12153475153486Non coding
203. AGA11153697153707Non coding
204. CTTTTT19153916153934Non coding
205. GGAG13154972154984Non coding
206. TA27156140156166Non coding
207. GATA12158182158193Non coding
208. CTTG11158835158845Non coding
209. GAA11159264159274Non coding
210. TCTCT15160071160085Non coding
211. TTG11160465160475Non coding
212. TTCTAT17160700160716Non coding
213. GCTT11160929160939Non coding
214. CTT12161100161111Non coding
215. CTTT13161772161784Non coding
216. CCTT15162260162274Non coding
217. TAC12162560162571Non coding
218. CTG12163193163204Non coding
219. AACT11165820165830Non coding
220. CTAG11166171166181Non coding
221. TTTA13166444166456Non coding
222. TTTC11166834166844Non coding
223. AAAG12167865167876Non coding
224. GAAA12169837169848Non coding
225. GAG11169957169967Non coding
226. AT11170853170863Non coding
227. TTTCTT18170897170914Non coding
228. CTC11171359171369Non coding
229. TTA12172969172980Non coding
230. TTCA11173206173216Non coding
231. TA13173743173755Non coding
232. TTA12173750173761Non coding
233. TGAAAG18173952173969Non coding
234. TGGAAA18174291174308Non coding
235. CTT11174452174462Non coding
236. ACT11177424177434Non coding
237. AAGA12180898180909Non coding
238. GCT12181187181198Non coding
239. AACGA14181257181270Non coding
240. TTC12184977184988Non coding
241. AAGA13185850185862Non coding
242. TGGC11186531186541Non coding
243. CAA11186744186754Non coding
244. ACAG11187511187521Non coding
245. CTTA11187966187976Coding
246. AGCA11188194188204Coding
247. AAAG12190023190034Non coding
248. TAG11192179192189Non coding
249. AAGG11192692192702Non coding
250. ATTT11194161194171Non coding
251. TTCC12196891196902Non coding
252. CATAC14197002197015Non coding
253. TAG11197848197858Non coding
254. ATTG11199989199999Non coding
255. TCTT12200114200125Non coding
256. GAA16200577200592Non coding
257. ATG11202841202851Non coding
258. TGT12204176204187Non coding
259. CCTT13204718204730Non coding
260. GA11204937204947Non coding
261. CTG12206636206647Non coding
262. ATA12206711206722Non coding
263. GGA12206723206734Non coding
264. TTGTT15207067207081Non coding
265. ATC12208376208387Non coding
266. GAG12212110212121Non coding
267. TA11212778212788Non coding
268. GGAAA15213375213389Coding
269. TGAG12214160214171Non coding
270. GAAA11214774214784Non coding
271. AGT12215524215535Non coding
272. ATTT12215802215813Non coding
273. ATCAGT18216166216183Non coding
274. AAG12216195216206Non coding
275. AATA13216735216747Non coding
276. AAGA13216848216860Non coding
277. ATCA20216996217015Non coding
278. TTCA11220228220238Non coding
279. TG11220410220420Non coding
280. TGCGTT19220428220446Non coding
281. TCCT12220535220546Non coding
282. AGCA11220589220599Non coding
283. GAT12221170221181Non coding
284. TTC12221905221916Non coding
285. AAGA12222876222887Non coding
286. CAGT11223049223059Non coding
287. GGCAA14223676223689Non coding
288. TAG12224079224090Non coding
289. ATCT13227803227815Non coding
290. GAGATA18228379228396Non coding
291. TAGC17229003229019Non coding
292. CTATT15229296229310Non coding
293. TCTT12229786229797Non coding
294. CCGTC14230482230495Non coding
295. ATAA11232370232380Non coding
296. GGTT13234559234571Coding
297. GAAAG14236529236542Non coding
298. AAG14236920236933Non coding
299. ATA11237119237129Non coding
300. TTA12238333238344Non coding
301. TTC15239803239817Non coding
302. CTT11239899239909Non coding
303. TTTC12240682240693Non coding
304. GAAT12240779240790Non coding
305. GAAT16241481241496Non coding
306. AGAAA15242521242535Non coding
307. CTT11247047247057Non coding
308. AGA12247095247106Non coding
309. TCTTT21247992248012Non coding
310. ACCT11248095248105Non coding
311. GAA12248675248686Non coding
312. AATA12250106250117Non coding
313. CATC12250987250998Non coding
314. CTAT11251472251482Non coding
315. AAAG12253509253520Non coding
316. CTC12255010255021Non coding
317. GAAT11256683256693Non coding
318. TC11257009257019Non coding
319. GA11257090257100Non coding
320. TA12258051258062Non coding
321. AATC12260557260568Non coding
322. GT11260639260649Non coding
323. TC11261391261401Non coding
324. CAAG13261846261858Non coding
325. GTTC12262294262305Non coding
326. AGG15262327262341Non coding
327. TACC12262960262971Non coding
328. ACTAAT23264858264880Non coding
329. AG14265379265392Non coding
330. GAA12265418265429Non coding
331. TTC13269221269233Coding
332. GTC12269335269346Coding
333. ATA13269495269507Coding-Non coding
334. CTT11270573270583Non coding
335. AATG11272139272149Coding
336. TCT12272290272301Coding
337. AGA11273955273965Non coding
338. TTAT13274861274873Non coding
339. TTCC12274959274970Non coding
340. GAAA11275274275284Non coding
341. AGAA12275292275303Non coding
342. TCAT12276784276795Non coding
343. TTA12276911276922Non coding
344. CTC12277068277079Non coding
345. ATAG11277162277172Non coding
346. TTCCAG17278068278084Non coding
347. CTT11278665278675Non coding
348. GAG11278718278728Non coding
349. CAG11279215279225Non coding
350. T13280492280504Non coding
351. TTCT12282409282420Non coding
352. CTTC12283732283743Non coding
353. GAAA11283776283786Non coding
354. AATATA18283965283982Non coding
355. TTTA12284883284894Non coding
356. AAAG12291682291693Coding
357. ATA19291709291727Coding
358. TCCA11291761291771Coding
359. AGGA16294943294958Non coding
360. GAAA20296205296224Non coding
361. GACT12296674296685Non coding
362. CTT12296893296904Non coding
363. AG13299208299220Non coding
364. ACTT11301637301647Non coding
365. AACT11302557302567Non coding
366. CTA12304985304996Non coding
367. CTTTC19306778306796Non coding
368. AAGGG15306923306937Non coding
369. AGTG12307276307287Non coding
370. AT12309713309724Non coding
371. TA14310534310547Non coding
372. AT13311172311184Non coding
373. TTTTG14311266311279Non coding
374. TTTC11311353311363Non coding
375. TCT11312516312526Non coding
376. TA12313403313414Non coding
377. TTGA11313947313957Non coding
378. ATT12314046314057Non coding
379. ATAG12314427314438Non coding
380. GTTT12315047315058Non coding
381. CTT11315917315927Non coding
382. CTT12315964315975Non coding
383. AATG11317546317556Coding
384. CTT13318093318105Coding
385. AGT11319797319807Non coding
386. CGT11320047320057Non coding
387. CA11320421320431Non coding
388. TCT12320968320979Non coding
389. AG11321150321160Non coding
390. TACAAG18321420321437Non coding
391. CTTT12321687321698Non coding
392. GGAA11322388322398Non coding
393. CTT12324986324997Non coding
394. AAGAT15324998325012Non coding
395. TTTA12328336328347Non coding
396. TA13329399329411Non coding
397. AT11332265332275Non coding
398. TCT12333306333317Non coding
399. AGAA16333547333562Non coding
400. TA14335677335690Non coding
401. AATAA14336004336017Coding
402. ATTCC15336691336705Non coding
403. GTC12336735336746Non coding
404. ATG15339401339415Non coding
405. TCT12340065340076Non coding
406. ATG11341416341426Non coding
407. GCA12342804342815Non coding
408. TG11342841342851Non coding
409. TG11344716344726Non coding
410. CTTT12346714346725Non coding
411. TCT13347280347292Non coding
412. GGTTG14347778347791Non coding
413. TGG12349611349622Non coding
414. AGTT12352602352613Non coding
415. TAG11352638352648Non coding
416. GAT12355546355557Non coding
417. AGT12356310356321Non coding
418. TA11356488356498Non coding
419. AAAG12356633356644Non coding
420. AAT12357359357370Coding-Non coding
421. TTCTTT19357439357457Non coding
422. GAAT16360775360790Non coding
423. AAGG11361049361059Non coding
424. TTTA12362357362368Non coding
425. AAG12362369362380Non coding
426. AGA13363080363092Non coding
427. TTC12364629364640Non coding
428. CATG11369166369176Non coding
429. AGG12369463369474Non coding
430. TA11369973369983Non coding
431. TTC12371078371089Non coding
432. CTT11371452371462Non coding
433. CCTT11371913371923Non coding
434. ACTA15373218373232Non coding
435. CTT12376149376160Non coding
436. ACT11376391376401Non coding
437. CTT12378247378258Non coding
438. TCT13378919378931Non coding
439. TA11381271381281Non coding
440. GAAAA20382213382232Non coding
441. GATT11383396383406Non coding
442. GAAT11383695383705Non coding
443. GA11384560384570Non coding
444. TTG12385138385149Non coding
445. AG12385308385319Non coding
446. GAAA11385568385578Non coding
447. TAA12386918386929Non coding
448. GTTT13387391387403Non coding
449. CTTTA14388571388584Non coding
450. TC11389063389073Non coding
451. GTCA11389535389545Non coding
452. TCC11390992391002Non coding
453. GAAAT15394815394829Non coding
454. GCAA12395139395150Non coding
455. TCT12396021396032Non coding
456. TTTA12396138396149Non coding
457. TCTA12396226396237Non coding
458. TC11397211397221Non coding
459. GAA12397405397416Non coding
460. CTTT11398197398207Non coding
461. TCT11399554399564Non coding
462. AAAT11399846399856Non coding
463. TTAC12401959401970Non coding
464. AAAC12401975401986Non coding
465. AAAT11402156402166Non coding
466. TTGA11402314402324Non coding
467. GTAT12402402402413Non coding
468. ATCT12402553402564Non coding
469. AGA12404087404098Non coding
470. TTTC12404906404917Non coding
471. CTTTTT19405555405573Non coding
472. CT11406100406110Non coding
473. CTT11406419406429Non coding
474. CCTT11409773409783Non coding
475. GCGT11411167411177Non coding
476. TAAG12411804411815Non coding
477. ACT11411993412003Non coding
478. TCCC12414005414016Non coding
479. AC12416144416155Non coding
480. GA11416241416251Non coding
481. CAGA11418200418210Non coding
482. TTA13418738418750Non coding
483. AAT13420059420071Non coding
484. T12422052422063Non coding
485. ATT12422329422340Non coding
486. TTGA11422671422681Non coding
487. CTATTG18424790424807Non coding
488. GAAT11425818425828Non coding
489. GTT12426734426745Non coding
490. CCTA11427655427665Non coding
491. TC11430030430040Non coding
492. ATA12430111430122Non coding
493. AAAT11430126430136Non coding
494. TGG12430683430694Non coding
495. CTT12430993431004Non coding
496. TTGC12431174431185Non coding
497. TCC11433012433022Non coding
498. TCCC12434241434252Non coding
499. CTTT12434394434405Non coding
500. GAAA12435159435170Non coding
501. T12435404435415Non coding
502. A12439074439085Non coding