MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 65     Density of SSR      : 1SSR/ 7.85 kb   Average length of SSR  : 12.38 bp
Coding      : 3     Non-Coding           : 61   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAG)3121136511376Non coding
2. (CTTT)3121281712828Non coding
3. (TATT)3121421814229Non coding
4. (AT)6122030920320Non coding
5. (AGA)4122728027291Non coding
6. (TTC)4123315633167Non coding
7. (ATTC)3123329633307Non coding
8. (TTTAT)3154931649330Non coding
9. (TTAT)3125426454275Coding
10. (GA)6125913659147Non coding
11. (GGAG)3126217662187Non coding
12. (GATG)3127316273173Non coding
13. (TGAA)3127686876879Non coding
14. (TCTT)3128126581276Non coding
15. (T)12128425484265Non coding
16. (AAGA)3129692996940Non coding
17. (AGGA)3129896298973Non coding
18. (A)1212100084100095Non coding
19. (TA)612105283105294Non coding
20. (CGAT)312146303146314Non coding
21. (TTCT)312152954152965Non coding
22. (TA)612156147156158Non coding
23. (TATC)312160521160532Non coding
24. (T)1212163310163321Non coding
25. (CTAA)312164723164734Non coding
26. (TTC)412170686170697Non coding
27. (T)1212171384171395Non coding
28. (CTTT)312177446177457Non coding
29. (TCTT)312179529179540Non coding
30. (GAA)412200577200588Non coding
31. (ACTA)312203484203495Non coding
32. (TAGA)312206747206758Non coding
33. (GAAT)312241485241496Non coding
34. (TCTTT)315247992248006Non coding
35. (AGGG)312249796249807Non coding
36. (AGGG)312260348260359Non coding
37. (AG)612265379265390Non coding
38. (AT)714283972283985Non coding
39. (AATAA)315291711291725Coding
40. (CTT)412292605292616Non coding
41. (CAAG)312296273296284Non coding
42. (TA)612310534310545Non coding
43. (AT)612311172311183Non coding
44. (CAAG)312312417312428Non coding
45. (TCTT)312318879318890Non coding
46. (TA)612335677335688Non coding
47. (TAA)412336715336726Non coding
48. (ATG)412339401339412Non coding
49. (TTCTT)315364918364932Non coding
50. (TAGC)312373620373631Non coding
51. (TTTA)312381230381241Non coding
52. (AGGG)312396121396132Non coding
53. (TCAT)312404497404508Non coding
54. (AGA)412412598412609Non coding
55. (A)1414418780418793Non coding
56. (TTTA)312435441435452Non coding
57. (ACTAG)315436427436441Coding-Non coding
58. (ATTGAT)318439686439703Coding
59. (TA)612455943455954Non coding
60. (CTTC)312470215470226Non coding
61. (TTA)412473053473064Non coding
62. (AT)612490152490163Non coding
63. (GAAA)312491845491856Non coding
64. (A)1212496075496086Non coding
65. (TGAC)312506722506733Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.