MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.86 kb   Average length of SSR  : 12.38 bp
Coding      : 27     Non-Coding           : 562   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. GTTTT1448634876Non coding
2. TCTTT142526725280Non coding
3. GATTG153236532379Non coding
4. ATACT144251042523Non coding
5. TTCTA194341043428Non coding
6. TCCTT154672446738Non coding
7. TTTAT204931649335Non coding
8. TATTT145268852701Non coding
9. TTTTG155361853632Coding
10. TATCG147620076213Non coding
11. AGTAT14108686108699Non coding
12. AATAG14115883115896Coding
13. GTCTC16124150124165Non coding
14. CTTTG14124397124410Non coding
15. CAGAC15133596133610Non coding
16. TGGAA14151613151626Non coding
17. TCTCT15160071160085Non coding
18. AACGA14181257181270Non coding
19. CATAC14197002197015Non coding
20. TTGTT15207067207081Non coding
21. GGAAA15213375213389Coding
22. GGCAA14223676223689Non coding
23. CTATT15229296229310Non coding
24. CCGTC14230482230495Non coding
25. GAAAG14236529236542Non coding
26. AGAAA15242521242535Non coding
27. TCTTT21247992248012Non coding
28. CTTTC19306778306796Non coding
29. AAGGG15306923306937Non coding
30. TTTTG14311266311279Non coding
31. AAGAT15324998325012Non coding
32. AATAA14336004336017Coding
33. ATTCC15336691336705Non coding
34. GGTTG14347778347791Non coding
35. GAAAA20382213382232Non coding
36. CTTTA14388571388584Non coding
37. GAAAT15394815394829Non coding
38. CTAGT15482256482270Non coding
39. TTGGA15507940507954Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.