MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.86 kb   Average length of SSR  : 12.38 bp
Coding      : 27     Non-Coding           : 562   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AGA1224222433Non coding
2. ATT1157855795Non coding
3. GAA1293959406Non coding
4. CTT111445214462Non coding
5. AGC121595315964Non coding
6. CCT111708717097Non coding
7. CAG121770017711Non coding
8. GGT112247922489Non coding
9. AAG122565225663Non coding
10. GAT112663926649Non coding
11. CTA122825828269Non coding
12. GAA122864428655Non coding
13. AGA122890628917Non coding
14. GCA122928829299Non coding
15. GAA133078730799Non coding
16. TCT123315733168Non coding
17. ACT113341233422Non coding
18. GTG123500635017Non coding
19. CTT134970049712Non coding
20. GAA125073450745Non coding
21. CTT125092650937Non coding
22. CTA125262652637Non coding
23. CTA135774857760Non coding
24. AGA116005260062Non coding
25. TCT116047560485Non coding
26. CTT126268662697Non coding
27. ATG136315863170Non coding
28. CAT117024270252Non coding
29. CAG117050870518Non coding
30. GTA117297072980Non coding
31. AGA127428674297Coding
32. TTG117934079350Non coding
33. TAA129012190132Non coding
34. ATA129042090431Non coding
35. CTT129337493385Non coding
36. CTT119972899738Non coding
37. AGA12106346106357Coding
38. TAT11106970106980Non coding
39. TAA12110002110013Non coding
40. AAG12111172111183Non coding
41. TCC11112919112929Non coding
42. GCT11113822113832Non coding
43. AGA11116078116088Non coding
44. CAT11116257116267Coding
45. GTT11117451117461Non coding
46. AGA13126562126574Non coding
47. CTT12126887126898Non coding
48. CGT13127746127758Non coding
49. ACC13128997129009Non coding
50. CGT11131383131393Non coding
51. TTC11131869131879Coding
52. ATG11132582132592Non coding
53. GAA12134650134661Non coding
54. ATT12135441135452Non coding
55. TCT12136228136239Non coding
56. TGA11136539136549Non coding
57. GAT11137540137550Non coding
58. CTA12145104145115Non coding
59. TTG12145890145901Non coding
60. CTT11146574146584Non coding
61. CTG12146756146767Non coding
62. TAT12150899150910Non coding
63. ATT12153062153073Non coding
64. AGA11153697153707Non coding
65. GAA11159264159274Non coding
66. TTG11160465160475Non coding
67. CTT12161100161111Non coding
68. TAC12162560162571Non coding
69. CTG12163193163204Non coding
70. GAG11169957169967Non coding
71. CTC11171359171369Non coding
72. TTA12172969172980Non coding
73. TTA12173750173761Non coding
74. CTT11174452174462Non coding
75. ACT11177424177434Non coding
76. GCT12181187181198Non coding
77. TTC12184977184988Non coding
78. CAA11186744186754Non coding
79. TAG11192179192189Non coding
80. TAG11197848197858Non coding
81. GAA16200577200592Non coding
82. ATG11202841202851Non coding
83. TGT12204176204187Non coding
84. CTG12206636206647Non coding
85. ATA12206711206722Non coding
86. GGA12206723206734Non coding
87. ATC12208376208387Non coding
88. GAG12212110212121Non coding
89. AGT12215524215535Non coding
90. AAG12216195216206Non coding
91. GAT12221170221181Non coding
92. TTC12221905221916Non coding
93. TAG12224079224090Non coding
94. AAG14236920236933Non coding
95. ATA11237119237129Non coding
96. TTA12238333238344Non coding
97. TTC15239803239817Non coding
98. CTT11239899239909Non coding
99. CTT11247047247057Non coding
100. AGA12247095247106Non coding
101. GAA12248675248686Non coding
102. CTC12255010255021Non coding
103. AGG15262327262341Non coding
104. GAA12265418265429Non coding
105. TTC13269221269233Coding
106. GTC12269335269346Coding
107. ATA13269495269507Coding-Non coding
108. CTT11270573270583Non coding
109. TCT12272290272301Coding
110. AGA11273955273965Non coding
111. TTA12276911276922Non coding
112. CTC12277068277079Non coding
113. CTT11278665278675Non coding
114. GAG11278718278728Non coding
115. CAG11279215279225Non coding
116. ATA19291709291727Coding
117. CTT12296893296904Non coding
118. CTA12304985304996Non coding
119. TCT11312516312526Non coding
120. ATT12314046314057Non coding
121. CTT11315917315927Non coding
122. CTT12315964315975Non coding
123. CTT13318093318105Coding
124. AGT11319797319807Non coding
125. CGT11320047320057Non coding
126. TCT12320968320979Non coding
127. CTT12324986324997Non coding
128. TCT12333306333317Non coding
129. GTC12336735336746Non coding
130. ATG15339401339415Non coding
131. TCT12340065340076Non coding
132. ATG11341416341426Non coding
133. GCA12342804342815Non coding
134. TCT13347280347292Non coding
135. TGG12349611349622Non coding
136. TAG11352638352648Non coding
137. GAT12355546355557Non coding
138. AGT12356310356321Non coding
139. AAT12357359357370Coding-Non coding
140. AAG12362369362380Non coding
141. AGA13363080363092Non coding
142. TTC12364629364640Non coding
143. AGG12369463369474Non coding
144. TTC12371078371089Non coding
145. CTT11371452371462Non coding
146. CTT12376149376160Non coding
147. ACT11376391376401Non coding
148. CTT12378247378258Non coding
149. TCT13378919378931Non coding
150. TTG12385138385149Non coding
151. TAA12386918386929Non coding
152. TCC11390992391002Non coding
153. TCT12396021396032Non coding
154. GAA12397405397416Non coding
155. TCT11399554399564Non coding
156. AGA12404087404098Non coding
157. CTT11406419406429Non coding
158. ACT11411993412003Non coding
159. TTA13418738418750Non coding
160. AAT13420059420071Non coding
161. ATT12422329422340Non coding
162. GTT12426734426745Non coding
163. ATA12430111430122Non coding
164. TGG12430683430694Non coding
165. CTT12430993431004Non coding
166. TCC11433012433022Non coding
167. AAG12440810440821Non coding
168. TTA12441815441826Non coding
169. ATC12443221443232Non coding
170. TCA11448085448095Non coding
171. ATA12448375448386Non coding
172. AGA11450463450473Non coding
173. ACC12453838453849Non coding
174. TAT13455937455949Non coding
175. ATA13455948455960Non coding
176. GCT11457698457708Non coding
177. ATA13461000461012Non coding
178. CTT13461729461741Non coding
179. TCT12462708462719Non coding
180. AGA12472065472076Non coding
181. TTA14473053473066Non coding
182. CAA12474511474522Non coding
183. TGT11475841475851Non coding
184. TTA11482034482044Non coding
185. AAG12483175483186Non coding
186. TCT11484751484761Non coding
187. AGA12484899484910Non coding
188. AGG11489422489432Non coding
189. AGA13489721489733Non coding
190. ATT12489831489842Non coding
191. TAT12490115490126Non coding
192. ATA13490146490158Non coding
193. TTC11490559490569Non coding
194. CTA12493183493194Non coding
195. ATT12498137498148Non coding
196. CGA12498539498550Non coding
197. GAG12499245499256Non coding
198. CCT13499999500011Non coding
199. GCA12500109500120Non coding
200. CAG11500165500175Non coding
201. CTT11500270500280Non coding
202. AGA12504961504972Non coding
203. GCA12505544505555Non coding
204. AGA11507109507119Non coding
205. AAG12508701508712Non coding
206. AAC11510047510057Coding
207. GAC12510412510423Coding
208. GGT11510467510477Coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.