MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Boea hygrometrica (NC_016741 510519 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.86 kb   Average length of SSR  : 12.38 bp
Coding      : 27     Non-Coding           : 562   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 11 9 33 5 1 65
IMPERFECT 8 79 208 237 39 20 591
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TAAC1125442554Non coding
2. TTTC1239863997Non coding
3. AAAG1144854495Non coding
4. ACTT1150835093Non coding
5. TTTC1253775388Non coding
6. CAAT1158615871Non coding
7. GAAA1263496360Non coding
8. AAGA1391529164Non coding
9. CCTT111101311023Non coding
10. CTTT131186911881Non coding
11. TTCC121694516956Non coding
12. TTTC111842918439Non coding
13. GGAA121878518796Non coding
14. CCGA112145721467Non coding
15. CTTT122167821689Non coding
16. GGGA122186721878Non coding
17. TCCT133088930901Non coding
18. CTTT133242032432Non coding
19. ACTC113251432524Non coding
20. ATTC173329633312Non coding
21. CCTT113650836518Non coding
22. CATT113968739697Non coding
23. TTAC124022140232Non coding
24. AAAG114220742217Non coding
25. GAAA124354643557Non coding
26. GATG134508045092Non coding
27. GAAG124519045201Non coding
28. AATG114635346363Non coding
29. AAGC114640546415Non coding
30. TGAA124712647137Non coding
31. GGCA154738047394Non coding
32. AATC114919249202Non coding
33. AAGA134979649808Non coding
34. CCTT125128351294Non coding
35. GGAT125198051991Non coding
36. TCCT125259752608Non coding
37. ACTT125484654857Non coding
38. TCGA115654056550Non coding
39. TGAA115791557925Non coding
40. CTTA135999860010Non coding
41. ACCC126082360834Non coding
42. TTCC126190861919Non coding
43. GGAG166217662191Non coding
44. ATCT126445864469Non coding
45. AATC126875468765Non coding
46. TTCC116996969979Non coding
47. AAAG117125371263Non coding
48. TAGC117135371363Non coding
49. GATG167316273177Non coding
50. TTCT127472674737Non coding
51. GAAA137511875130Non coding
52. CCTT127909779108Non coding
53. GCTT117925279262Non coding
54. TTCC118247582485Non coding
55. CTTC138386783879Non coding
56. CAGG129580195812Non coding
57. AAGA119599696006Non coding
58. AAGA169692596940Non coding
59. AAAG12104507104518Non coding
60. GGTT13108296108308Non coding
61. GGAA12110951110962Non coding
62. ACCC11115370115380Coding
63. GGGA11122792122802Non coding
64. GCCT12123927123938Non coding
65. AAAG11124995125005Non coding
66. CTAA11125883125893Non coding
67. TTTC11126039126049Non coding
68. ACCC12127084127095Non coding
69. AAAG11128162128172Non coding
70. CTTT11128682128692Non coding
71. AGAA11131596131606Non coding
72. GGAC11132721132731Non coding
73. CATT13133510133522Non coding
74. CCCA13134100134112Non coding
75. CATC12134360134371Coding
76. AGGT11136862136872Non coding
77. TGCT12141477141488Non coding
78. GGTA12142694142705Non coding
79. AGGA12147042147053Non coding
80. AGGA11148446148456Non coding
81. GATA11149513149523Non coding
82. TAGC12149624149635Non coding
83. TAAC12153475153486Non coding
84. GGAG13154972154984Non coding
85. GATA12158182158193Non coding
86. CTTG11158835158845Non coding
87. GCTT11160929160939Non coding
88. CTTT13161772161784Non coding
89. CCTT15162260162274Non coding
90. AACT11165820165830Non coding
91. CTAG11166171166181Non coding
92. TTTA13166444166456Non coding
93. TTTC11166834166844Non coding
94. AAAG12167865167876Non coding
95. GAAA12169837169848Non coding
96. TTCA11173206173216Non coding
97. AAGA12180898180909Non coding
98. AAGA13185850185862Non coding
99. TGGC11186531186541Non coding
100. ACAG11187511187521Non coding
101. CTTA11187966187976Coding
102. AGCA11188194188204Coding
103. AAAG12190023190034Non coding
104. AAGG11192692192702Non coding
105. ATTT11194161194171Non coding
106. TTCC12196891196902Non coding
107. ATTG11199989199999Non coding
108. TCTT12200114200125Non coding
109. CCTT13204718204730Non coding
110. TGAG12214160214171Non coding
111. GAAA11214774214784Non coding
112. ATTT12215802215813Non coding
113. AATA13216735216747Non coding
114. AAGA13216848216860Non coding
115. ATCA20216996217015Non coding
116. TTCA11220228220238Non coding
117. TCCT12220535220546Non coding
118. AGCA11220589220599Non coding
119. AAGA12222876222887Non coding
120. CAGT11223049223059Non coding
121. ATCT13227803227815Non coding
122. TAGC17229003229019Non coding
123. TCTT12229786229797Non coding
124. ATAA11232370232380Non coding
125. GGTT13234559234571Coding
126. TTTC12240682240693Non coding
127. GAAT12240779240790Non coding
128. GAAT16241481241496Non coding
129. ACCT11248095248105Non coding
130. AATA12250106250117Non coding
131. CATC12250987250998Non coding
132. CTAT11251472251482Non coding
133. AAAG12253509253520Non coding
134. GAAT11256683256693Non coding
135. AATC12260557260568Non coding
136. CAAG13261846261858Non coding
137. GTTC12262294262305Non coding
138. TACC12262960262971Non coding
139. AATG11272139272149Coding
140. TTAT13274861274873Non coding
141. TTCC12274959274970Non coding
142. GAAA11275274275284Non coding
143. AGAA12275292275303Non coding
144. TCAT12276784276795Non coding
145. ATAG11277162277172Non coding
146. TTCT12282409282420Non coding
147. CTTC12283732283743Non coding
148. GAAA11283776283786Non coding
149. TTTA12284883284894Non coding
150. AAAG12291682291693Coding
151. TCCA11291761291771Coding
152. AGGA16294943294958Non coding
153. GAAA20296205296224Non coding
154. GACT12296674296685Non coding
155. ACTT11301637301647Non coding
156. AACT11302557302567Non coding
157. AGTG12307276307287Non coding
158. TTTC11311353311363Non coding
159. TTGA11313947313957Non coding
160. ATAG12314427314438Non coding
161. GTTT12315047315058Non coding
162. AATG11317546317556Coding
163. CTTT12321687321698Non coding
164. GGAA11322388322398Non coding
165. TTTA12328336328347Non coding
166. AGAA16333547333562Non coding
167. CTTT12346714346725Non coding
168. AGTT12352602352613Non coding
169. AAAG12356633356644Non coding
170. GAAT16360775360790Non coding
171. AAGG11361049361059Non coding
172. TTTA12362357362368Non coding
173. CATG11369166369176Non coding
174. CCTT11371913371923Non coding
175. ACTA15373218373232Non coding
176. GATT11383396383406Non coding
177. GAAT11383695383705Non coding
178. GAAA11385568385578Non coding
179. GTTT13387391387403Non coding
180. GTCA11389535389545Non coding
181. GCAA12395139395150Non coding
182. TTTA12396138396149Non coding
183. TCTA12396226396237Non coding
184. CTTT11398197398207Non coding
185. AAAT11399846399856Non coding
186. TTAC12401959401970Non coding
187. AAAC12401975401986Non coding
188. AAAT11402156402166Non coding
189. TTGA11402314402324Non coding
190. GTAT12402402402413Non coding
191. ATCT12402553402564Non coding
192. TTTC12404906404917Non coding
193. CCTT11409773409783Non coding
194. GCGT11411167411177Non coding
195. TAAG12411804411815Non coding
196. TCCC12414005414016Non coding
197. CAGA11418200418210Non coding
198. TTGA11422671422681Non coding
199. GAAT11425818425828Non coding
200. CCTA11427655427665Non coding
201. AAAT11430126430136Non coding
202. TTGC12431174431185Non coding
203. TCCC12434241434252Non coding
204. CTTT12434394434405Non coding
205. GAAA12435159435170Non coding
206. AGGG11439423439433Non coding
207. TTGC12442189442200Non coding
208. TCAT11445973445983Non coding
209. TGCT11447793447803Non coding
210. AAAG11450554450564Non coding
211. AAAC12451121451132Non coding
212. AAGC11451143451153Non coding
213. CATA11451451451461Non coding
214. CAGA11456291456301Non coding
215. CTTT11456733456743Non coding
216. AAGA12457221457232Non coding
217. TGGG11458917458927Non coding
218. GTCT11461341461351Non coding
219. GAAA11463576463586Non coding
220. ACTC13465092465104Non coding
221. AATC11465228465238Non coding
222. CTTT13465288465300Non coding
223. CCGT11466044466054Non coding
224. AGCT12468091468102Non coding
225. GGAA11468585468595Non coding
226. AAGG13471881471893Non coding
227. TTCG11478567478577Non coding
228. TGGC11479639479649Non coding
229. CCTT11480254480264Non coding
230. GGAA11481184481194Non coding
231. ATAG11482080482090Non coding
232. AAAG11482683482693Non coding
233. ACGA12483560483571Non coding
234. CCTG12491665491676Non coding
235. TGTA12503946503957Non coding
236. ATCA12508408508419Non coding
237. AAAG13508620508632Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.