MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica carinata (NC_016120 232241 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 32     Density of SSR      : 1SSR/ 7.26 kb   Average length of SSR  : 12.75 bp
Coding      : 3     Non-Coding           : 27   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 1 6 19 1 0 32
IMPERFECT 6 28 98 103 23 11 269
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTTC)3129901001Non coding
2. (GAA)41247504761Non coding
3. (CATT)3121158711598Coding
4. (TTC)4122104821059Non coding
5. (GTT)4122272522736Non coding
6. (TTTA)3122655426565Non coding
7. (AG)6123579135802Non coding
8. (CAAA)3125165951670Non coding
9. (T)16165479354808Coding
10. (TAAA)3128243582446Non coding
11. (TCTT)3128258882599Non coding
12. (TTTC)3129056090571Non coding
13. (GAA)6189376193778Non coding
14. (GTTC)3129673896749Non coding
15. (GAA)412100498100509Non coding
16. (TGAA)312108959108970Non coding
17. (AAAC)312116987116998Non coding
18. (AAAC)312131709131720Non coding
19. (T)1313139804139816Non coding
20. (A)1414160009160022Coding
21. (A)1313165639165651Non coding
22. (ATTT)312173569173580Non coding
23. (TCAT)312179532179543Non coding
24. (A)1515188448188462Non coding
25. (TTGT)312196561196572Non coding
26. (AAGA)312200472200483Coding-Non coding
27. (CTAGT)315202493202507Coding-Non coding
28. (AATG)312203050203061Non coding
29. (GCCG)312206698206709Non coding
30. (AATG)416222718222733Non coding
31. (CAG)412225104225115Non coding
32. (TGAG)312230338230349Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.