MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica carinata (NC_016120 232241 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 32     Density of SSR      : 1SSR/ 7.26 kb   Average length of SSR  : 12.75 bp
Coding      : 3     Non-Coding           : 27   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 1 6 19 1 0 32
IMPERFECT 6 28 98 103 23 11 269
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTTC)3129901001Non coding
2. (CATT)3121158711598Coding
3. (TTTA)3122655426565Non coding
4. (CAAA)3125165951670Non coding
5. (TAAA)3128243582446Non coding
6. (TCTT)3128258882599Non coding
7. (TTTC)3129056090571Non coding
8. (GTTC)3129673896749Non coding
9. (TGAA)312108959108970Non coding
10. (AAAC)312116987116998Non coding
11. (AAAC)312131709131720Non coding
12. (ATTT)312173569173580Non coding
13. (TCAT)312179532179543Non coding
14. (TTGT)312196561196572Non coding
15. (AAGA)312200472200483Coding-Non coding
16. (AATG)312203050203061Non coding
17. (GCCG)312206698206709Non coding
18. (AATG)416222718222733Non coding
19. (TGAG)312230338230349Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.