MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica juncea (NC_016123 219766 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 29     Density of SSR      : 1SSR/ 7.58 kb   Average length of SSR  : 13.03 bp
Coding      : 6     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 5 18 1 0 29
IMPERFECT 7 27 91 84 23 8 240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41222252236Non coding
2. (TTCT)31239583969Coding
3. (CTT)82441844207Coding
4. (AAGA)3121539315404Non coding
5. (TTTA)3121554615557Non coding
6. (A)16162868328698Non coding
7. (A)14143429634309Non coding
8. (AAGA)3124110141112Non coding
9. (AGTG)3124363443645Non coding
10. (TCAT)3124819548206Non coding
11. (TTCA)3126376163772Non coding
12. (CATT)3127540775418Coding
13. (TTC)4128486784878Non coding
14. (GTT)4128646686477Non coding
15. (TTTA)3129029790308Non coding
16. (A)1616107208107223Coding
17. (TTTG)312110338110349Non coding
18. (GTTC)312120092120103Non coding
19. (TTC)412125905125916Non coding
20. (AAAC)312130730130741Non coding
21. (AAAC)312145595145606Non coding
22. (T)1313153636153648Non coding
23. (AAAT)312174572174583Coding
24. (TC)612186299186310Non coding
25. (AAGA)312196675196686Coding-Non coding
26. (CTAGT)315198696198710Coding-Non coding
27. (AATG)312199254199265Non coding
28. (GCCG)312202904202915Coding
29. (AATG)416218924218939Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.