MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica juncea (NC_016123 219766 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 29     Density of SSR      : 1SSR/ 7.58 kb   Average length of SSR  : 13.03 bp
Coding      : 6     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 5 18 1 0 29
IMPERFECT 7 27 91 84 23 8 240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCT)31239583969Coding
2. (AAGA)3121539315404Non coding
3. (TTTA)3121554615557Non coding
4. (AAGA)3124110141112Non coding
5. (AGTG)3124363443645Non coding
6. (TCAT)3124819548206Non coding
7. (TTCA)3126376163772Non coding
8. (CATT)3127540775418Coding
9. (TTTA)3129029790308Non coding
10. (TTTG)312110338110349Non coding
11. (GTTC)312120092120103Non coding
12. (AAAC)312130730130741Non coding
13. (AAAC)312145595145606Non coding
14. (AAAT)312174572174583Coding
15. (AAGA)312196675196686Coding-Non coding
16. (AATG)312199254199265Non coding
17. (GCCG)312202904202915Coding
18. (AATG)416218924218939Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.