MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica napus (NC_008285 221853 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 27     Density of SSR      : 1SSR/ 8.22 kb   Average length of SSR  : 13 bp
Coding      : 7     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 0 4 18 1 0 27
IMPERFECT 9 28 97 87 24 6 251
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAGA)31213161327Non coding
2. (TTTA)31214691480Non coding
3. (A)14141458614599Coding
4. (A)13132019920211Non coding
5. (AAGA)3122700827019Non coding
6. (TCAT)3123410234113Non coding
7. (GAAA)3124618146192Non coding
8. (GAAG)3124723247243Non coding
9. (AAGA)3125977659787Coding-Non coding
10. (CTAGT)3156179761811Coding-Non coding
11. (AATG)3126235562366Non coding
12. (GCCG)3126600566016Coding
13. (AATG)4168202782042Non coding
14. (TTC)4128509385104Non coding
15. (GTT)4128669286703Non coding
16. (TTTA)3129052390534Non coding
17. (A)1616107433107448Coding
18. (TTTG)312110563110574Non coding
19. (ATTT)312130977130988Coding
20. (A)1313152178152190Non coding
21. (TGTT)312160215160226Non coding
22. (GTTT)312175065175076Non coding
23. (TTCA)312188804188815Non coding
24. (CATT)312200541200552Coding
25. (TTC)412210001210012Non coding
26. (TTCT)312211734211745Coding
27. (CTT)824211960211983Coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.