MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica oleracea (NC_016118 360271 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 46     Density of SSR      : 1SSR/ 7.83 kb   Average length of SSR  : 12.61 bp
Coding      : 8     Non-Coding           : 37   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 7 2 6 29 2 0 46
IMPERFECT 11 49 163 135 35 12 405
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGGC)312454465Coding
2. (TTCA)31241034114Non coding
3. (ACTAG)31546604674Coding-Non coding
4. (TTCT)31266836694Coding
5. (AG)6121706017071Non coding
6. (GTTC)3121814918160Non coding
7. (TTC)4122396223973Non coding
8. (AAAC)3122878728798Non coding
9. (AAAC)3124365043661Non coding
10. (T)13135168851700Non coding
11. (AAAT)3127288972900Coding
12. (A)14149142291435Coding
13. (A)12129703397044Non coding
14. (AAGA)312103840103851Non coding
15. (AGTG)312106373106384Non coding
16. (TCAT)312110934110945Non coding
17. (TTCA)312126501126512Non coding
18. (CATT)312138179138190Coding
19. (TTC)412147638147649Non coding
20. (TTCT)312149371149382Coding
21. (CTT)824149597149620Coding
22. (AAGA)312160807160818Non coding
23. (TTTA)312160960160971Non coding
24. (TTCA)312174135174146Non coding
25. (ACTAG)315174692174706Non coding
26. (TTCT)312176715176726Non coding
27. (AG)612187092187103Non coding
28. (GTTC)312188181188192Non coding
29. (TTC)412193994194005Non coding
30. (AAAC)312198819198830Non coding
31. (AAAC)312213682213693Non coding
32. (T)1313221720221732Non coding
33. (AAAT)312242921242932Non coding
34. (A)1414261454261467Non coding
35. (A)1212267065267076Non coding
36. (AAGA)312273872273883Non coding
37. (AGTG)312276405276416Non coding
38. (TCAT)312280966280977Non coding
39. (TTCA)312296533296544Non coding
40. (CATT)312308211308222Non coding
41. (TTC)412317670317681Non coding
42. (GTT)412319269319280Non coding
43. (TTTA)312323101323112Non coding
44. (A)1616340009340024Coding
45. (TTTG)312343139343150Non coding
46. (GCCG)312348489348500Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.