| |
Organism:
Brassica oleracea
|
(NC_016118 , 360271 bp)
|
|
Show Primer
Download
|
|
Compound
:
0
|
Perfect Compound
:
0
|
Overlapping Compound
:
0
|
|
Perfect
:
46
|
Density of SSR
:
1SSR/
7.83
kb
|
Average length of SSR
:
12.61
bp
|
|
Coding
:
8
|
Non-Coding
:
37
|
Coding and Non-Coding
:
1
|
| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
|
PERFECT
|
7
|
2
|
6
|
29
|
2
|
0
|
46
|
|
|
Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
|
1.
| (CGGC)3 | 12 | 454 | 465 | Coding |
|
2.
| (TTCA)3 | 12 | 4103 | 4114 | Non coding |
|
3.
| (ACTAG)3 | 15 | 4660 | 4674 | Coding-Non coding |
|
4.
| (TTCT)3 | 12 | 6683 | 6694 | Coding |
|
5.
| (AG)6 | 12 | 17060 | 17071 | Non coding |
|
6.
| (GTTC)3 | 12 | 18149 | 18160 | Non coding |
|
7.
| (TTC)4 | 12 | 23962 | 23973 | Non coding |
|
8.
| (AAAC)3 | 12 | 28787 | 28798 | Non coding |
|
9.
| (AAAC)3 | 12 | 43650 | 43661 | Non coding |
|
10.
| (T)13 | 13 | 51688 | 51700 | Non coding |
|
11.
| (AAAT)3 | 12 | 72889 | 72900 | Coding |
|
12.
| (A)14 | 14 | 91422 | 91435 | Coding |
|
13.
| (A)12 | 12 | 97033 | 97044 | Non coding |
|
14.
| (AAGA)3 | 12 | 103840 | 103851 | Non coding |
|
15.
| (AGTG)3 | 12 | 106373 | 106384 | Non coding |
|
16.
| (TCAT)3 | 12 | 110934 | 110945 | Non coding |
|
17.
| (TTCA)3 | 12 | 126501 | 126512 | Non coding |
|
18.
| (CATT)3 | 12 | 138179 | 138190 | Coding |
|
19.
| (TTC)4 | 12 | 147638 | 147649 | Non coding |
|
20.
| (TTCT)3 | 12 | 149371 | 149382 | Coding |
|
21.
| (CTT)8 | 24 | 149597 | 149620 | Coding |
|
22.
| (AAGA)3 | 12 | 160807 | 160818 | Non coding |
|
23.
| (TTTA)3 | 12 | 160960 | 160971 | Non coding |
|
24.
| (TTCA)3 | 12 | 174135 | 174146 | Non coding |
|
25.
| (ACTAG)3 | 15 | 174692 | 174706 | Non coding |
|
26.
| (TTCT)3 | 12 | 176715 | 176726 | Non coding |
|
27.
| (AG)6 | 12 | 187092 | 187103 | Non coding |
|
28.
| (GTTC)3 | 12 | 188181 | 188192 | Non coding |
|
29.
| (TTC)4 | 12 | 193994 | 194005 | Non coding |
|
30.
| (AAAC)3 | 12 | 198819 | 198830 | Non coding |
|
31.
| (AAAC)3 | 12 | 213682 | 213693 | Non coding |
|
32.
| (T)13 | 13 | 221720 | 221732 | Non coding |
|
33.
| (AAAT)3 | 12 | 242921 | 242932 | Non coding |
|
34.
| (A)14 | 14 | 261454 | 261467 | Non coding |
|
35.
| (A)12 | 12 | 267065 | 267076 | Non coding |
|
36.
| (AAGA)3 | 12 | 273872 | 273883 | Non coding |
|
37.
| (AGTG)3 | 12 | 276405 | 276416 | Non coding |
|
38.
| (TCAT)3 | 12 | 280966 | 280977 | Non coding |
|
39.
| (TTCA)3 | 12 | 296533 | 296544 | Non coding |
|
40.
| (CATT)3 | 12 | 308211 | 308222 | Non coding |
|
41.
| (TTC)4 | 12 | 317670 | 317681 | Non coding |
|
42.
| (GTT)4 | 12 | 319269 | 319280 | Non coding |
|
43.
| (TTTA)3 | 12 | 323101 | 323112 | Non coding |
|
44.
| (A)16 | 16 | 340009 | 340024 | Coding |
|
45.
| (TTTG)3 | 12 | 343139 | 343150 | Non coding |
|
46.
| (GCCG)3 | 12 | 348489 | 348500 | Non coding |
|
|
|
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
Site best viewed at 1280x768.
|
|
|
|