MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Brassica rapa subsp. campestris (NC_016125 219747 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 29     Density of SSR      : 1SSR/ 7.58 kb   Average length of SSR  : 13.03 bp
Coding      : 6     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 5 18 1 0 29
IMPERFECT 7 27 91 85 23 8 241
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41222232234Non coding
2. (TTCT)31239563967Coding
3. (CTT)82441824205Coding
4. (AAGA)3121539015401Non coding
5. (TTTA)3121554415555Non coding
6. (A)16162868028695Non coding
7. (A)14143429434307Non coding
8. (AAGA)3124109741108Non coding
9. (AGTG)3124363043641Non coding
10. (TCAT)3124819148202Non coding
11. (TTCA)3126375563766Non coding
12. (CATT)3127540275413Coding
13. (TTC)4128486084871Non coding
14. (GTT)4128645986470Non coding
15. (TTTA)3129029090301Non coding
16. (A)1616107199107214Coding
17. (TTTG)312110329110340Non coding
18. (GTTC)312120081120092Non coding
19. (TTC)412125894125905Non coding
20. (AAAC)312130716130727Non coding
21. (AAAC)312145580145591Non coding
22. (T)1313153620153632Non coding
23. (AAAT)312174551174562Coding
24. (TC)612186279186290Non coding
25. (AAGA)312196655196666Coding-Non coding
26. (CTAGT)315198676198690Coding-Non coding
27. (AATG)312199234199245Non coding
28. (GCCG)312202884202895Coding
29. (AATG)416218905218920Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.