MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Bucklandiella orthotrichacea (NC_026974 107215 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 46     Density of SSR      : 1SSR/ 2.28 kb   Average length of SSR  : 14.43 bp
Coding      : 7     Non-Coding           : 39   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 7 24 3 10 2 0 46
IMPERFECT 19 43 31 53 12 5 163
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AT)8167691Non coding
2. (AT)612820831Non coding
3. (AAAT)31210961107Non coding
4. (TA)122411521175Non coding
5. (AT)6121142711438Non coding
6. (ATAG)3121152511536Non coding
7. (T)13131189211904Coding
8. (AT)7141322613239Non coding
9. (AT)9181495314970Non coding
10. (TTTA)3121577515786Coding
11. (T)13131634616358Coding
12. (A)12121684216853Coding
13. (T)12121841718428Coding
14. (AT)6122061820629Non coding
15. (AT)9182676326780Non coding
16. (AT)6122864628657Non coding
17. (TA)7142921229225Non coding
18. (AT)8163028930304Non coding
19. (AAAT)4163505835073Non coding
20. (GAAG)3123536935380Non coding
21. (AAT)4124087540886Non coding
22. (ATATA)3154230342317Non coding
23. (AT)8164234742362Non coding
24. (AT)6124516245173Non coding
25. (GATTA)4205536455383Non coding
26. (AT)7145540955422Non coding
27. (G)12125759857609Non coding
28. (AT)7145771457727Non coding
29. (AT)7146564365656Non coding
30. (AT)8167232272337Non coding
31. (ATTT)3127260372614Coding
32. (AT)7147333073343Non coding
33. (TTA)4127361973630Coding
34. (ACT)4127444474455Non coding
35. (AT)8167516075175Non coding
36. (AATG)3127608276093Non coding
37. (T)14147999780010Non coding
38. (T)13138521185223Non coding
39. (AT)7148762587638Non coding
40. (AT)6129042390434Non coding
41. (TAGA)3129259992610Coding-Non coding
42. (AT)7149292292935Non coding
43. (AAAT)3129731997330Non coding
44. (TA)714101219101232Non coding
45. (ATTT)312101391101402Non coding
46. (AT)918106953106970Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.