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Organism:
Bucklandiella orthotrichacea
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(NC_026974 , 107215 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
0
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Overlapping Compound
:
1
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Perfect
:
46
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Density of SSR
:
1SSR/
2.28
kb
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Average length of SSR
:
14.43
bp
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Coding
:
7
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Non-Coding
:
39
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Coding and Non-Coding
:
1
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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7
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24
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3
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10
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2
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0
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46
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (AT)8 | 16 | 76 | 91 | Non coding |
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2.
| (AT)6 | 12 | 820 | 831 | Non coding |
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3.
| (AAAT)3 | 12 | 1096 | 1107 | Non coding |
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4.
| (TA)12 | 24 | 1152 | 1175 | Non coding |
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5.
| (AT)6 | 12 | 11427 | 11438 | Non coding |
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6.
| (ATAG)3 | 12 | 11525 | 11536 | Non coding |
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7.
| (T)13 | 13 | 11892 | 11904 | Coding |
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8.
| (AT)7 | 14 | 13226 | 13239 | Non coding |
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9.
| (AT)9 | 18 | 14953 | 14970 | Non coding |
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10.
| (TTTA)3 | 12 | 15775 | 15786 | Coding |
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11.
| (T)13 | 13 | 16346 | 16358 | Coding |
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12.
| (A)12 | 12 | 16842 | 16853 | Coding |
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13.
| (T)12 | 12 | 18417 | 18428 | Coding |
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14.
| (AT)6 | 12 | 20618 | 20629 | Non coding |
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15.
| (AT)9 | 18 | 26763 | 26780 | Non coding |
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16.
| (AT)6 | 12 | 28646 | 28657 | Non coding |
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17.
| (TA)7 | 14 | 29212 | 29225 | Non coding |
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18.
| (AT)8 | 16 | 30289 | 30304 | Non coding |
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19.
| (AAAT)4 | 16 | 35058 | 35073 | Non coding |
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20.
| (GAAG)3 | 12 | 35369 | 35380 | Non coding |
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21.
| (AAT)4 | 12 | 40875 | 40886 | Non coding |
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22.
| (ATATA)3 | 15 | 42303 | 42317 | Non coding |
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23.
| (AT)8 | 16 | 42347 | 42362 | Non coding |
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24.
| (AT)6 | 12 | 45162 | 45173 | Non coding |
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25.
| (GATTA)4 | 20 | 55364 | 55383 | Non coding |
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26.
| (AT)7 | 14 | 55409 | 55422 | Non coding |
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27.
| (G)12 | 12 | 57598 | 57609 | Non coding |
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28.
| (AT)7 | 14 | 57714 | 57727 | Non coding |
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29.
| (AT)7 | 14 | 65643 | 65656 | Non coding |
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30.
| (AT)8 | 16 | 72322 | 72337 | Non coding |
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31.
| (ATTT)3 | 12 | 72603 | 72614 | Coding |
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32.
| (AT)7 | 14 | 73330 | 73343 | Non coding |
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33.
| (TTA)4 | 12 | 73619 | 73630 | Coding |
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34.
| (ACT)4 | 12 | 74444 | 74455 | Non coding |
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35.
| (AT)8 | 16 | 75160 | 75175 | Non coding |
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36.
| (AATG)3 | 12 | 76082 | 76093 | Non coding |
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37.
| (T)14 | 14 | 79997 | 80010 | Non coding |
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38.
| (T)13 | 13 | 85211 | 85223 | Non coding |
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39.
| (AT)7 | 14 | 87625 | 87638 | Non coding |
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40.
| (AT)6 | 12 | 90423 | 90434 | Non coding |
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41.
| (TAGA)3 | 12 | 92599 | 92610 | Coding-Non coding |
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42.
| (AT)7 | 14 | 92922 | 92935 | Non coding |
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43.
| (AAAT)3 | 12 | 97319 | 97330 | Non coding |
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44.
| (TA)7 | 14 | 101219 | 101232 | Non coding |
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45.
| (ATTT)3 | 12 | 101391 | 101402 | Non coding |
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46.
| (AT)9 | 18 | 106953 | 106970 | Non coding |
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Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
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