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Organism:
Butomus umbellatus
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(NC_021399 , 450826 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
1
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Overlapping Compound
:
0
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Perfect
:
50
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Density of SSR
:
1SSR/
8.67
kb
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Average length of SSR
:
14.02
bp
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Coding
:
2
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Non-Coding
:
49
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Coding and Non-Coding
:
0
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
|
4
|
5
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10
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27
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4
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0
|
50
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (C)14 | 14 | 9 | 22 | Non coding |
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2.
| (TCT)4 | 12 | 1271 | 1282 | Non coding |
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3.
| (TTGC)3 | 12 | 1885 | 1896 | Non coding |
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4.
| (CATT)3 | 12 | 8248 | 8259 | Coding |
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5.
| (AG)6 | 12 | 28167 | 28178 | Non coding |
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6.
| (CTGA)3 | 12 | 44780 | 44791 | Non coding |
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7.
| (GAAA)3 | 12 | 51249 | 51260 | Non coding |
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8.
| (C)15 | 15 | 52486 | 52500 | Non coding |
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9.
| (CAAG)3 | 12 | 72689 | 72700 | Non coding |
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10.
| (ACCT)3 | 12 | 79345 | 79356 | Non coding |
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11.
| (CAGG)3 | 12 | 84445 | 84456 | Non coding |
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12.
| (GAGC)3 | 12 | 90764 | 90775 | Non coding |
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13.
| (TCGG)3 | 12 | 101143 | 101154 | Non coding |
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14.
| (GCT)4 | 12 | 131020 | 131031 | Non coding |
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15.
| (CTCC)3 | 12 | 161675 | 161686 | Non coding |
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16.
| (AAGAG)3 | 15 | 172819 | 172833 | Non coding |
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17.
| (CTC)4 | 12 | 174246 | 174257 | Non coding |
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18.
| (TTCA)3 | 12 | 182638 | 182649 | Non coding |
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19.
| (AAGC)3 | 12 | 200581 | 200592 | Non coding |
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20.
| (TCCC)3 | 12 | 201731 | 201742 | Non coding |
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21.
| (AG)6 | 12 | 202961 | 202972 | Non coding |
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22.
| (GA)6 | 12 | 203190 | 203201 | Non coding |
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23.
| (GAATC)3 | 15 | 213003 | 213017 | Non coding |
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24.
| (TATAG)14 | 70 | 221402 | 221471 | Non coding |
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25.
| (GACT)3 | 12 | 227777 | 227788 | Non coding |
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26.
| (GAAA)3 | 12 | 242386 | 242397 | Coding |
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27.
| (ACAG)3 | 12 | 244141 | 244152 | Non coding |
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28.
| (CTA)4 | 12 | 245856 | 245867 | Non coding |
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29.
| (AAGG)3 | 12 | 247465 | 247476 | Non coding |
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30.
| (CTT)4 | 12 | 248469 | 248480 | Non coding |
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31.
| (TACCC)3 | 15 | 255080 | 255094 | Non coding |
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32.
| (TCT)4 | 12 | 255184 | 255195 | Non coding |
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33.
| (CTAT)3 | 12 | 257786 | 257797 | Non coding |
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34.
| (CTCC)3 | 12 | 260064 | 260075 | Non coding |
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35.
| (AGA)4 | 12 | 276878 | 276889 | Non coding |
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36.
| (TA)6 | 12 | 286143 | 286154 | Non coding |
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37.
| (GAAT)3 | 12 | 307304 | 307315 | Non coding |
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38.
| (AACT)3 | 12 | 314822 | 314833 | Non coding |
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39.
| (AT)7 | 14 | 334873 | 334886 | Non coding |
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40.
| (CAGA)3 | 12 | 345821 | 345832 | Non coding |
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41.
| (TGT)4 | 12 | 357751 | 357762 | Non coding |
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42.
| (CAAG)3 | 12 | 381347 | 381358 | Non coding |
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43.
| (CATT)3 | 12 | 387667 | 387678 | Non coding |
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44.
| (C)13 | 13 | 396249 | 396261 | Non coding |
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45.
| (C)14 | 14 | 403342 | 403355 | Non coding |
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46.
| (ATTC)3 | 12 | 407751 | 407762 | Non coding |
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47.
| (TTCG)3 | 12 | 435131 | 435142 | Non coding |
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48.
| (GAG)4 | 12 | 436492 | 436503 | Non coding |
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49.
| (AGA)4 | 12 | 448557 | 448568 | Non coding |
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50.
| (GCCG)3 | 12 | 449523 | 449534 | Non coding |
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Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
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