MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Butomus umbellatus (NC_021399 450826 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 50     Density of SSR      : 1SSR/ 8.67 kb   Average length of SSR  : 14.02 bp
Coding      : 2     Non-Coding           : 49   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 10 27 4 0 50
IMPERFECT 8 65 170 211 29 12 495
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (C)1414922Non coding
2. (TCT)41212711282Non coding
3. (TTGC)31218851896Non coding
4. (CATT)31282488259Coding
5. (AG)6122816728178Non coding
6. (CTGA)3124478044791Non coding
7. (GAAA)3125124951260Non coding
8. (C)15155248652500Non coding
9. (CAAG)3127268972700Non coding
10. (ACCT)3127934579356Non coding
11. (CAGG)3128444584456Non coding
12. (GAGC)3129076490775Non coding
13. (TCGG)312101143101154Non coding
14. (GCT)412131020131031Non coding
15. (CTCC)312161675161686Non coding
16. (AAGAG)315172819172833Non coding
17. (CTC)412174246174257Non coding
18. (TTCA)312182638182649Non coding
19. (AAGC)312200581200592Non coding
20. (TCCC)312201731201742Non coding
21. (AG)612202961202972Non coding
22. (GA)612203190203201Non coding
23. (GAATC)315213003213017Non coding
24. (TATAG)1470221402221471Non coding
25. (GACT)312227777227788Non coding
26. (GAAA)312242386242397Coding
27. (ACAG)312244141244152Non coding
28. (CTA)412245856245867Non coding
29. (AAGG)312247465247476Non coding
30. (CTT)412248469248480Non coding
31. (TACCC)315255080255094Non coding
32. (TCT)412255184255195Non coding
33. (CTAT)312257786257797Non coding
34. (CTCC)312260064260075Non coding
35. (AGA)412276878276889Non coding
36. (TA)612286143286154Non coding
37. (GAAT)312307304307315Non coding
38. (AACT)312314822314833Non coding
39. (AT)714334873334886Non coding
40. (CAGA)312345821345832Non coding
41. (TGT)412357751357762Non coding
42. (CAAG)312381347381358Non coding
43. (CATT)312387667387678Non coding
44. (C)1313396249396261Non coding
45. (C)1414403342403355Non coding
46. (ATTC)312407751407762Non coding
47. (TTCG)312435131435142Non coding
48. (GAG)412436492436503Non coding
49. (AGA)412448557448568Non coding
50. (GCCG)312449523449534Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.