MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Butomus umbellatus (NC_021399 450826 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 50     Density of SSR      : 1SSR/ 8.67 kb   Average length of SSR  : 14.02 bp
Coding      : 2     Non-Coding           : 49   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 10 27 4 0 50
IMPERFECT 8 65 170 211 29 12 495
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTGC)31218851896Non coding
2. (CATT)31282488259Coding
3. (CTGA)3124478044791Non coding
4. (GAAA)3125124951260Non coding
5. (CAAG)3127268972700Non coding
6. (ACCT)3127934579356Non coding
7. (CAGG)3128444584456Non coding
8. (GAGC)3129076490775Non coding
9. (TCGG)312101143101154Non coding
10. (CTCC)312161675161686Non coding
11. (TTCA)312182638182649Non coding
12. (AAGC)312200581200592Non coding
13. (TCCC)312201731201742Non coding
14. (GACT)312227777227788Non coding
15. (GAAA)312242386242397Coding
16. (ACAG)312244141244152Non coding
17. (AAGG)312247465247476Non coding
18. (CTAT)312257786257797Non coding
19. (CTCC)312260064260075Non coding
20. (GAAT)312307304307315Non coding
21. (AACT)312314822314833Non coding
22. (CAGA)312345821345832Non coding
23. (CAAG)312381347381358Non coding
24. (CATT)312387667387678Non coding
25. (ATTC)312407751407762Non coding
26. (TTCG)312435131435142Non coding
27. (GCCG)312449523449534Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.