MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Buxbaumia aphylla (NC_024518 100725 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.83 kb   Average length of SSR  : 14.25 bp
Coding      : 33     Non-Coding           : 87   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 20 3 6 2 0 32
IMPERFECT 4 38 34 35 7 4 122
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. ATTA12533544Non coding
2. AATC12676687Non coding
3. ATTAT15954968Non coding
4. AT1211391150Non coding
5. AT5213941445Non coding
6. AATT1620092024Non coding
7. CTAT1141114121Non coding
8. ATTT1155315541Non coding
9. TAA1258065817Non coding
10. AG1166556665Non coding
11. CTC1274417452Coding
12. TTAT1283408351Non coding
13. TTA1589618975Non coding
14. CGTA111073010740Coding
15. TTTC111099511005Coding
16. AT161169411709Non coding
17. ACA121201112022Non coding
18. AT121354913560Non coding
19. GTTC121377513786Coding
20. AT441449214535Non coding
21. TAG121501515026Coding
22. TA241528415307Non coding
23. ATT111556215572Non coding
24. TTA121582515836Coding
25. TTTA121599616007Coding
26. TTTC111659316603Coding
27. GA111688616896Coding
28. GGT131785917871Coding
29. TC131861618628Coding
30. TTAT121927919290Coding
31. AT122042620437Coding
32. AT252076420788Non coding
33. AATC122129321304Non coding
34. TTCC112198321993Non coding
35. ATCG112208222092Non coding
36. TAA132251522527Non coding
37. A182441924436Coding
38. AT222501325034Non coding
39. ATGT112518125191Non coding
40. CAT112731227322Coding
41. ATA122739127402Coding
42. TA182770527722Non coding
43. AT222935029371Non coding
44. AATT112998629996Non coding
45. ATG123026030271Non coding
46. CAT113406634076Non coding
47. TTA123442034431Non coding
48. GCG113509635106Coding
49. TA113938139391Non coding
50. AT114159841608Non coding
51. AAAT124173841749Non coding
52. AATA114215442164Non coding
53. ATA124252242533Non coding
54. AT144406044073Non coding
55. TTATT164588445899Coding
56. GC114652546535Non coding
57. GCA114667046680Non coding
58. CTTG124719147202Coding
59. AGA115096650976Non coding
60. GAATA155100751021Non coding
61. TGA145123351246Non coding
62. GC115419354203Non coding
63. AATA125439054401Non coding
64. TTTG115562055630Coding
65. ATTCGA185596755984Non coding
66. AT125687656887Non coding
67. AT235899659018Non coding
68. CATAG145933059343Coding
69. CTC135996559977Non coding
70. AAAAT146064860661Non coding
71. AT316068860718Non coding
72. TTTA116188061890Coding
73. AT166244162456Non coding
74. AT166257962594Non coding
75. GCA116288862898Non coding
76. AGAA126483564846Non coding
77. T136650066512Coding
78. TCT116722767237Non coding
79. TCG126753467545Non coding
80. AAGCC156951569529Non coding
81. ACAT117006470074Coding
82. GGAC117083270842Non coding
83. AAAT117150371513Non coding
84. AGTTGT187181971836Non coding
85. CGC117184971859Non coding
86. TA127245372464Non coding
87. A127251672527Non coding
88. TTGG127285272863Coding
89. AT217318173201Non coding
90. AT227459174612Non coding
91. AT227509575116Non coding
92. AT387527175308Non coding
93. TTGG127552875539Coding
94. AT117931979329Coding
95. ATTTT147970579718Non coding
96. AAAG118010080110Non coding
97. AT128023880249Non coding
98. ATT128076280773Non coding
99. ATT118169981709Non coding
100. TTTA128172481735Coding-Non coding
101. TAC128310883119Non coding
102. ATG118640386413Non coding
103. GA148661186624Non coding
104. TTAG128701787028Coding
105. AT148712787140Non coding
106. AG128792387934Non coding
107. AT168873188746Non coding
108. ATT129110291113Coding
109. TTCA119120691216Coding
110. GA119171891728Coding
111. TTA129222892239Coding
112. TAAT129303593046Coding-Non coding
113. AT189567495691Non coding
114. TTATTT189574795764Non coding
115. AGA129584495855Coding
116. AAC129640396414Non coding
117. ATAAAA189680496821Non coding
118. AT129746997480Non coding
119. ACT119853998549Non coding
120. G26100169100194Non coding
121. TTCG12100483100494Non coding
122. TCT11100647100657Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.