MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Capsicum annuum (NC_024624 511530 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 86     Density of SSR      : 1SSR/ 5.95 kb   Average length of SSR  : 12.71 bp
Coding      : 13     Non-Coding           : 72   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 8 15 46 10 2 86
IMPERFECT 11 89 187 273 44 28 632
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GACC)31222472258Coding
2. (TAA)41258035814Non coding
3. (AAAAGC)3181024610263Non coding
4. (GATA)3121434314354Non coding
5. (GAAA)3121855018561Non coding
6. (A)12122054820559Non coding
7. (TTA)4122059320604Non coding
8. (TAAA)3122697226983Non coding
9. (ATA)5153412834142Non coding
10. (AAT)5153504235056Non coding
11. (TTCT)3123538435395Non coding
12. (GAA)4124072240733Coding
13. (A)12124928949300Non coding
14. (A)12125245452465Non coding
15. (AT)6126787967890Non coding
16. (AG)7148899889011Non coding
17. (GAAG)3129790797918Non coding
18. (TCTCT)315105651105665Non coding
19. (ATAG)312116681116692Non coding
20. (ATT)412120067120078Non coding
21. (AT)612124513124524Non coding
22. (CTTA)312125467125478Coding
23. (GAAA)312129729129740Non coding
24. (ATTC)312142483142494Non coding
25. (CTT)412143210143221Non coding
26. (TAAA)312154306154317Non coding
27. (CTCA)312154378154389Non coding
28. (TCTT)312159243159254Non coding
29. (ATTT)312160527160538Coding-Non coding
30. (TTCAT)315166969166983Non coding
31. (TCTT)312173383173394Coding
32. (CTGT)312178903178914Non coding
33. (CAGCG)315180847180861Non coding
34. (GTCA)312180968180979Non coding
35. (CTGC)312183154183165Non coding
36. (CTTC)312185135185146Non coding
37. (CA)612207142207153Non coding
38. (CTTTT)315210180210194Coding
39. (GAAA)312211743211754Non coding
40. (AATA)312211863211874Non coding
41. (T)1212226901226912Non coding
42. (A)1616238389238404Non coding
43. (GAA)412238603238614Coding
44. (ATTG)416244445244460Non coding
45. (CA)612257639257650Non coding
46. (CTTTT)315260677260691Coding
47. (GAAA)312262240262251Non coding
48. (CTTT)312289316289327Non coding
49. (TCTT)312293146293157Non coding
50. (AGT)412294172294183Non coding
51. (CTTT)312300956300967Non coding
52. (CAAAC)315327606327620Non coding
53. (TGAG)312338733338744Non coding
54. (AAGA)312342473342484Non coding
55. (TTTC)312348142348153Non coding
56. (GTAATA)318357277357294Non coding
57. (TA)612360529360540Non coding
58. (AT)612372177372188Non coding
59. (TTA)412375687375698Non coding
60. (TCAT)312378077378088Non coding
61. (AGC)412385761385772Coding
62. (ATTC)312387990388001Non coding
63. (CTT)412388717388728Non coding
64. (AATC)312399394399405Non coding
65. (TAG)412401426401437Non coding
66. (GAAG)312411047411058Non coding
67. (CTG)412420011420022Non coding
68. (TTA)515434122434136Non coding
69. (TA)612434143434154Non coding
70. (TAAG)312435400435411Non coding
71. (CCAG)312435868435879Non coding
72. (GAAA)312436784436795Non coding
73. (CTTC)312443670443681Coding
74. (GGCG)312449327449338Coding
75. (AAATA)315452080452094Non coding
76. (TATT)312456658456669Non coding
77. (GAAAA)315458828458842Non coding
78. (CATAT)315464843464857Non coding
79. (ATAG)312465381465392Non coding
80. (AAAG)312466041466052Non coding
81. (TCCT)312484288484299Non coding
82. (GAAAG)315495571495585Non coding
83. (CATT)312496342496353Coding
84. (TCGC)312500219500230Non coding
85. (AAAG)312507369507380Coding
86. (AAAG)312510097510108Coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.