MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Capsicum annuum (NC_024624 511530 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 86     Density of SSR      : 1SSR/ 5.95 kb   Average length of SSR  : 12.71 bp
Coding      : 13     Non-Coding           : 72   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 8 15 46 10 2 86
IMPERFECT 11 89 187 273 44 28 632
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GACC)31222472258Coding
2. (GATA)3121434314354Non coding
3. (GAAA)3121855018561Non coding
4. (TAAA)3122697226983Non coding
5. (TTCT)3123538435395Non coding
6. (GAAG)3129790797918Non coding
7. (ATAG)312116681116692Non coding
8. (CTTA)312125467125478Coding
9. (GAAA)312129729129740Non coding
10. (ATTC)312142483142494Non coding
11. (TAAA)312154306154317Non coding
12. (CTCA)312154378154389Non coding
13. (TCTT)312159243159254Non coding
14. (ATTT)312160527160538Coding-Non coding
15. (TCTT)312173383173394Coding
16. (CTGT)312178903178914Non coding
17. (GTCA)312180968180979Non coding
18. (CTGC)312183154183165Non coding
19. (CTTC)312185135185146Non coding
20. (GAAA)312211743211754Non coding
21. (AATA)312211863211874Non coding
22. (ATTG)416244445244460Non coding
23. (GAAA)312262240262251Non coding
24. (CTTT)312289316289327Non coding
25. (TCTT)312293146293157Non coding
26. (CTTT)312300956300967Non coding
27. (TGAG)312338733338744Non coding
28. (AAGA)312342473342484Non coding
29. (TTTC)312348142348153Non coding
30. (TCAT)312378077378088Non coding
31. (ATTC)312387990388001Non coding
32. (AATC)312399394399405Non coding
33. (GAAG)312411047411058Non coding
34. (TAAG)312435400435411Non coding
35. (CCAG)312435868435879Non coding
36. (GAAA)312436784436795Non coding
37. (CTTC)312443670443681Coding
38. (GGCG)312449327449338Coding
39. (TATT)312456658456669Non coding
40. (ATAG)312465381465392Non coding
41. (AAAG)312466041466052Non coding
42. (TCCT)312484288484299Non coding
43. (CATT)312496342496353Coding
44. (TCGC)312500219500230Non coding
45. (AAAG)312507369507380Coding
46. (AAAG)312510097510108Coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.