MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Carica papaya (NC_012116 476890 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 86     Density of SSR      : 1SSR/ 5.42 kb   Average length of SSR  : 12.78 bp
Coding      : 2     Non-Coding           : 84   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 13 14 46 7 1 86
IMPERFECT 17 72 212 246 40 24 611
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TA)61217051716Non coding
2. (G)121223122323Non coding
3. (TCTT)31272927303Non coding
4. (ACA)41281998210Non coding
5. (AGAT)3121945319464Non coding
6. (T)12122600426015Non coding
7. (ATAG)3123112431135Non coding
8. (TTCT)3123476034771Non coding
9. (CTAGT)3153706337077Coding-Non coding
10. (AATG)3123732737338Non coding
11. (AC)6124012440135Non coding
12. (CTTT)3125439254403Non coding
13. (AAAG)3126069260703Non coding
14. (CTT)4127102071031Non coding
15. (TGAC)3127330373314Non coding
16. (GCCG)3128037380384Non coding
17. (AAG)4128597685987Non coding
18. (AGAA)312102894102905Non coding
19. (GAAG)312106252106263Non coding
20. (TCTT)312107933107944Non coding
21. (AT)714111339111352Non coding
22. (CTAGG)315113061113075Non coding
23. (TTATA)315114784114798Non coding
24. (AT)714127575127588Non coding
25. (CTAG)312135820135831Non coding
26. (AAG)412141846141857Non coding
27. (AAG)412145256145267Non coding
28. (GTAAT)315151097151111Non coding
29. (GGTC)312164557164568Non coding
30. (G)1212166366166377Non coding
31. (GAAT)312166528166539Non coding
32. (CTTT)312166754166765Non coding
33. (TCTT)312166955166966Non coding
34. (ACTC)312180335180346Non coding
35. (CAAG)312185340185351Non coding
36. (A)1212190414190425Non coding
37. (ATTC)312201963201974Non coding
38. (AT)816204028204043Non coding
39. (ACCG)312210342210353Non coding
40. (TCAT)312211370211381Non coding
41. (TTTC)312228991229002Non coding
42. (TA)612229176229187Non coding
43. (CTACA)315230861230875Non coding
44. (TTCT)312233433233444Non coding
45. (TAT)515235369235383Non coding
46. (AG)612240546240557Non coding
47. (TGAA)312248521248532Non coding
48. (GACT)312262387262398Non coding
49. (CATT)312268172268183Coding
50. (TTCC)312276845276856Non coding
51. (AAG)412279895279906Non coding
52. (GAA)412280056280067Non coding
53. (CT)714285176285189Non coding
54. (AAG)412287476287487Non coding
55. (CTT)412295957295968Non coding
56. (T)1313316637316649Non coding
57. (AT)612319986319997Non coding
58. (AGAA)312326664326675Non coding
59. (AGTG)312327355327366Non coding
60. (GCTT)312328634328645Non coding
61. (AGCA)312330135330146Non coding
62. (AAGA)312344830344841Non coding
63. (CCCG)312346726346737Non coding
64. (AAC)412351277351288Non coding
65. (AG)714352974352987Non coding
66. (AT)612357507357518Non coding
67. (ATCT)312358134358145Non coding
68. (CTTT)312363966363977Non coding
69. (TTAA)312366655366666Non coding
70. (AAGA)312367622367633Non coding
71. (AAGG)312382358382369Non coding
72. (TTTC)312387772387783Non coding
73. (CATA)312389804389815Non coding
74. (AT)612400623400634Non coding
75. (CAAC)312400669400680Non coding
76. (AGTGAA)318401577401594Non coding
77. (AAGC)312406730406741Non coding
78. (CTAGA)315443848443862Non coding
79. (TTCA)312446030446041Non coding
80. (GAAGC)315446624446638Non coding
81. (CTT)412450706450717Coding
82. (AAGA)312451922451933Non coding
83. (GTA)412453470453481Non coding
84. (TCT)412464229464240Non coding
85. (TTTC)312476076476087Non coding
86. (TA)612476261476272Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.