MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Carica papaya (NC_012116 476890 bp)                                                                                                     Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 86     Density of SSR      : 1SSR/ 5.42 kb   Average length of SSR  : 12.78 bp
Coding      : 2     Non-Coding           : 84   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 13 14 46 7 1 86
IMPERFECT 17 72 212 246 40 24 611
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCTT)31272927303Non coding
2. (AGAT)3121945319464Non coding
3. (ATAG)3123112431135Non coding
4. (TTCT)3123476034771Non coding
5. (AATG)3123732737338Non coding
6. (CTTT)3125439254403Non coding
7. (AAAG)3126069260703Non coding
8. (TGAC)3127330373314Non coding
9. (GCCG)3128037380384Non coding
10. (AGAA)312102894102905Non coding
11. (GAAG)312106252106263Non coding
12. (TCTT)312107933107944Non coding
13. (CTAG)312135820135831Non coding
14. (GGTC)312164557164568Non coding
15. (GAAT)312166528166539Non coding
16. (CTTT)312166754166765Non coding
17. (TCTT)312166955166966Non coding
18. (ACTC)312180335180346Non coding
19. (CAAG)312185340185351Non coding
20. (ATTC)312201963201974Non coding
21. (ACCG)312210342210353Non coding
22. (TCAT)312211370211381Non coding
23. (TTTC)312228991229002Non coding
24. (TTCT)312233433233444Non coding
25. (TGAA)312248521248532Non coding
26. (GACT)312262387262398Non coding
27. (CATT)312268172268183Coding
28. (TTCC)312276845276856Non coding
29. (AGAA)312326664326675Non coding
30. (AGTG)312327355327366Non coding
31. (GCTT)312328634328645Non coding
32. (AGCA)312330135330146Non coding
33. (AAGA)312344830344841Non coding
34. (CCCG)312346726346737Non coding
35. (ATCT)312358134358145Non coding
36. (CTTT)312363966363977Non coding
37. (TTAA)312366655366666Non coding
38. (AAGA)312367622367633Non coding
39. (AAGG)312382358382369Non coding
40. (TTTC)312387772387783Non coding
41. (CATA)312389804389815Non coding
42. (CAAC)312400669400680Non coding
43. (AAGC)312406730406741Non coding
44. (TTCA)312446030446041Non coding
45. (AAGA)312451922451933Non coding
46. (TTTC)312476076476087Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.