MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Chlorella sorokiniana (NC_024626 52528 bp)                                                                                               Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.66 kb   Average length of SSR  : 12.62 bp
Coding      : 32     Non-Coding           : 44   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 0 0 2 0 0 5
IMPERFECT 9 2 15 38 13 2 79
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. ATTA12112Non coding
2. AGA12424435Coding
3. AAT1223062317Non coding
4. TAAA1123342344Non coding
5. AATTA1524042418Non coding
6. TTTC1244994510Non coding
7. TTTTA1548354849Non coding
8. AGA1350665078Coding
9. ATTTG1454085421Coding
10. TTTA1255695580Non coding
11. T1257525763Coding
12. AAAG1168416851Non coding
13. T1281918202Non coding
14. TTTC111116411174Coding
15. GCGTT151267912693Coding
16. A151319413208Non coding
17. TTAA111321813228Non coding
18. AGAAA141348513498Non coding
19. TAAAAA191379313811Non coding
20. T121425414265Non coding
21. TTTG121675316764Coding
22. TA111791417924Non coding
23. A141804018053Non coding
24. TTTA121824918260Non coding
25. ATT122021920230Non coding
26. AAAT112170021710Non coding
27. TTC122302523036Coding
28. AAGGA152437324387Non coding
29. TGT122507225083Non coding
30. AGA112524725257Non coding
31. TTAT122717327184Non coding
32. TATTT162738727402Coding
33. TA122780127812Non coding
34. T132859628608Coding-Non coding
35. AATTT142902629039Non coding
36. TAAC113020330213Coding
37. TTTG123060930620Non coding
38. ACC123126731278Coding
39. A133239432406Non coding
40. TTTCT143245632469Non coding
41. GAAA113247332483Non coding
42. AGAA123258432595Non coding
43. TTAA123334933360Coding
44. CAAA113373033740Non coding
45. AAAAT143456434577Coding
46. TAAA123562635637Coding
47. ATAAA153572735741Coding
48. TTTG123585635867Non coding
49. GATT123612336134Non coding
50. ATTT113656836578Coding
51. TTTA123776737778Coding
52. AAAAT153835838372Coding-Non coding
53. TTTC113904839058Non coding
54. GTTT123944439455Non coding
55. GAAT113954839558Non coding
56. GCTT114057140581Coding
57. TCAA114127341283Non coding
58. ATTA164129241307Non coding
59. TTTA124134241353Non coding
60. AAC114166541675Coding
61. TAA124338143392Coding
62. ATA124366443675Coding-Non coding
63. A134413144143Non coding
64. CAA134625046262Coding
65. AAAATT194636846386Coding
66. AAGC114641446424Coding
67. AAAT114681946829Non coding
68. TATT164697546990Coding
69. CAAA124750747518Coding
70. AGAC134764447656Coding
71. CAAAT144825048263Non coding
72. A144833148344Non coding
73. AGT124874748758Coding
74. CTAT124882148832Coding
75. TAGA115042250432Coding
76. ATT125046750478Coding
77. TATT115096350973Coding
78. TTG125189651907Coding
79. AAGA125223252243Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.