MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Chlorokybus atmophyticus (NC_009630 201763 bp)                                                                                                     Show Primer       Download
Compound : 9     Perfect Compound : 7   Overlapping Compound : 2
Perfect      : 127     Density of SSR      : 1SSR/ 1.38 kb   Average length of SSR  : 28.87 bp
Coding      : 12     Non-Coding           : 123   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 0 2 37 76 8 127
IMPERFECT 10 5 86 96 111 20 328
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAACC)945582626Non coding
2. (TGCA)41644024417Non coding
3. (CTTT)31248384849Coding
4. (CATTC)52554345458Non coding
5. (GCAT)31255215532Non coding
6. (CAAAG)168070727151Non coding
7. (T)121284418452Non coding
8. (TGCAA)31589828996Coding
9. (TAAGTT)7421031410355Coding
10. (TGCA)5201286312882Non coding
11. (CAGTG)4201426414283Non coding
12. (GCAT)3121453614547Non coding
13. (C)12121468014691Non coding
14. (TGCA)3121515815169Non coding
15. (TGCAT)4201539115410Coding
16. (ATTCAA)4241771517738Non coding
17. (TGCA)3122018220193Non coding
18. (CATG)4162528125296Non coding
19. (AAAG)3122646726478Coding
20. (AATAA)3152861228626Non coding
21. (TGCAT)3153039330407Non coding
22. (CACTG)3153104231056Non coding
23. (CTGGG)4203107731096Non coding
24. (TAAAG)3153255132565Non coding
25. (TATTC)3153260632620Non coding
26. (TGCA)7283285132878Non coding
27. (CAGTG)3153294832962Non coding
28. (TGCA)6244581945842Non coding
29. (GATTA)3154758247596Non coding
30. (TAAT)3125029150302Non coding
31. (GCAT)11445612056163Non coding
32. (TTAGT)3155673456748Non coding
33. (TGCA)4165831858333Non coding
34. (AATAG)5256055260576Non coding
35. (CACTG)3156065860672Non coding
36. (CTGCA)3156068560699Non coding
37. (AGTAA)7356091560949Non coding
38. (ATGCA)3156135561369Non coding
39. (ATTT)3126173661747Non coding
40. (CAGCG)3156229162305Non coding
41. (ACCCAA)11666292262987Non coding
42. (ACTAA)3156569765711Non coding
43. (TGCAG)10506796668015Coding
44. (CAGTG)6306801868047Coding
45. (CTAAAA)3186817368190Coding
46. (TCGGTC)3186890168918Coding
47. (TGCA)4167032470339Non coding
48. (CATTG)3157214972163Non coding
49. (CAGTG)3157227172285Non coding
50. (ATGC)7287491874945Non coding
51. (TGCA)3127587875889Coding-Non coding
52. (TGCAG)351757707377247Coding
53. (TGCA)3127999080001Non coding
54. (CTGCA)3158066280676Non coding
55. (GCACT)271358396884102Non coding
56. (CTAGG)3158421384227Non coding
57. (T)12128501785028Coding
58. (CATTG)14708540185470Non coding
59. (AAGTA)4208559285611Non coding
60. (TTTAG)7358568885722Non coding
61. (AATGC)3158812888142Non coding
62. (GCATT)3158837888392Non coding
63. (TGCA)5208853288551Non coding
64. (TAGGC)4209020890227Non coding
65. (CATTG)3159358893602Non coding
66. (ACTAA)5259800598029Non coding
67. (ACTAA)3159897598989Non coding
68. (CTGCA)840103460103499Non coding
69. (TTAGAA)742105134105175Non coding
70. (TGCAG)315109885109899Non coding
71. (TGCA)1560111986112045Non coding
72. (TGCAG)420112250112269Non coding
73. (AGTGC)315112288112302Non coding
74. (CAGCC)1155114475114529Non coding
75. (ATGC)312116133116144Non coding
76. (GCAAT)630116643116672Non coding
77. (TTTAC)315124105124119Non coding
78. (TGCAG)315126142126156Non coding
79. (AGTAA)945130673130717Non coding
80. (TGCAG)315132243132257Non coding
81. (GTATA)420132420132439Non coding
82. (TGCAG)315132605132619Non coding
83. (AGTAG)315133218133232Non coding
84. (TGCA)312134104134115Non coding
85. (CTGGG)315135024135038Non coding
86. (GCTGG)315136905136919Non coding
87. (AGC)412137792137803Non coding
88. (CATG)312138421138432Non coding
89. (TGGAA)1155138709138763Non coding
90. (AGTGC)315138932138946Non coding
91. (TGCA)312141207141218Non coding
92. (CAATGT)1166143942144007Non coding
93. (G)1212144017144028Non coding
94. (TTATAT)318144971144988Non coding
95. (CCCAG)315150236150250Non coding
96. (TACAG)315151796151810Non coding
97. (ATGC)832153130153161Non coding
98. (CCAGT)420153389153408Non coding
99. (AGC)412156410156421Non coding
100. (ATGC)312158586158597Non coding
101. (CAGCC)315159655159669Non coding
102. (CAGCC)315159675159689Non coding
103. (CAGTG)315159740159754Non coding
104. (ACTGA)735162168162202Non coding
105. (AAAGT)420164541164560Non coding
106. (GCAT)312170145170156Non coding
107. (GTGCT)315170923170937Non coding
108. (GGGCT)315171743171757Non coding
109. (TGCA)312172394172405Non coding
110. (TGCA)312175663175674Non coding
111. (TACAA)735175957175991Non coding
112. (TGCA)312177987177998Non coding
113. (GCAT)312178297178308Non coding
114. (TGCA)312182689182700Non coding
115. (ATGC)1040182929182968Non coding
116. (TTTAC)420184791184810Non coding
117. (GACTG)315184898184912Non coding
118. (GCATT)420187310187329Non coding
119. (TGCA)312188530188541Non coding
120. (CAGCC)420188686188705Non coding
121. (CAGTG)420188756188775Non coding
122. (CAGTG)315188791188805Non coding
123. (ATGCA)39195190883191077Non coding
124. (CATC)312191460191471Non coding
125. (CGAGT)315191851191865Non coding
126. (CTGCC)420200958200977Non coding
127. (GCAT)520201287201306Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.