MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Chlorokybus atmophyticus (NC_009630 201763 bp)                                                                                                     Show Primer       Download
Compound : 9     Perfect Compound : 7   Overlapping Compound : 2
Perfect      : 127     Density of SSR      : 1SSR/ 1.38 kb   Average length of SSR  : 28.87 bp
Coding      : 12     Non-Coding           : 123   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 0 2 37 76 8 127
IMPERFECT 10 5 86 96 111 20 328
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAACC)945582626Non coding
2. (CATTC)52554345458Non coding
3. (CAAAG)168070727151Non coding
4. (TGCAA)31589828996Coding
5. (CAGTG)4201426414283Non coding
6. (TGCAT)4201539115410Coding
7. (AATAA)3152861228626Non coding
8. (TGCAT)3153039330407Non coding
9. (CACTG)3153104231056Non coding
10. (CTGGG)4203107731096Non coding
11. (TAAAG)3153255132565Non coding
12. (TATTC)3153260632620Non coding
13. (CAGTG)3153294832962Non coding
14. (GATTA)3154758247596Non coding
15. (TTAGT)3155673456748Non coding
16. (AATAG)5256055260576Non coding
17. (CACTG)3156065860672Non coding
18. (CTGCA)3156068560699Non coding
19. (AGTAA)7356091560949Non coding
20. (ATGCA)3156135561369Non coding
21. (CAGCG)3156229162305Non coding
22. (ACTAA)3156569765711Non coding
23. (TGCAG)10506796668015Coding
24. (CAGTG)6306801868047Coding
25. (CATTG)3157214972163Non coding
26. (CAGTG)3157227172285Non coding
27. (TGCAG)351757707377247Coding
28. (CTGCA)3158066280676Non coding
29. (GCACT)271358396884102Non coding
30. (CTAGG)3158421384227Non coding
31. (CATTG)14708540185470Non coding
32. (AAGTA)4208559285611Non coding
33. (TTTAG)7358568885722Non coding
34. (AATGC)3158812888142Non coding
35. (GCATT)3158837888392Non coding
36. (TAGGC)4209020890227Non coding
37. (CATTG)3159358893602Non coding
38. (ACTAA)5259800598029Non coding
39. (ACTAA)3159897598989Non coding
40. (CTGCA)840103460103499Non coding
41. (TGCAG)315109885109899Non coding
42. (TGCAG)420112250112269Non coding
43. (AGTGC)315112288112302Non coding
44. (CAGCC)1155114475114529Non coding
45. (GCAAT)630116643116672Non coding
46. (TTTAC)315124105124119Non coding
47. (TGCAG)315126142126156Non coding
48. (AGTAA)945130673130717Non coding
49. (TGCAG)315132243132257Non coding
50. (GTATA)420132420132439Non coding
51. (TGCAG)315132605132619Non coding
52. (AGTAG)315133218133232Non coding
53. (CTGGG)315135024135038Non coding
54. (GCTGG)315136905136919Non coding
55. (TGGAA)1155138709138763Non coding
56. (AGTGC)315138932138946Non coding
57. (CCCAG)315150236150250Non coding
58. (TACAG)315151796151810Non coding
59. (CCAGT)420153389153408Non coding
60. (CAGCC)315159655159669Non coding
61. (CAGCC)315159675159689Non coding
62. (CAGTG)315159740159754Non coding
63. (ACTGA)735162168162202Non coding
64. (AAAGT)420164541164560Non coding
65. (GTGCT)315170923170937Non coding
66. (GGGCT)315171743171757Non coding
67. (TACAA)735175957175991Non coding
68. (TTTAC)420184791184810Non coding
69. (GACTG)315184898184912Non coding
70. (GCATT)420187310187329Non coding
71. (CAGCC)420188686188705Non coding
72. (CAGTG)420188756188775Non coding
73. (CAGTG)315188791188805Non coding
74. (ATGCA)39195190883191077Non coding
75. (CGAGT)315191851191865Non coding
76. (CTGCC)420200958200977Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.