MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Chlorokybus atmophyticus (NC_009630 201763 bp)                                                                                                     Show Primer       Download
Compound : 9     Perfect Compound : 7   Overlapping Compound : 2
Perfect      : 127     Density of SSR      : 1SSR/ 1.38 kb   Average length of SSR  : 28.87 bp
Coding      : 12     Non-Coding           : 123   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 0 2 37 76 8 127
IMPERFECT 10 5 86 96 111 20 328
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGCA)41644024417Non coding
2. (CTTT)31248384849Coding
3. (GCAT)31255215532Non coding
4. (TGCA)5201286312882Non coding
5. (GCAT)3121453614547Non coding
6. (TGCA)3121515815169Non coding
7. (TGCA)3122018220193Non coding
8. (CATG)4162528125296Non coding
9. (AAAG)3122646726478Coding
10. (TGCA)7283285132878Non coding
11. (TGCA)6244581945842Non coding
12. (TAAT)3125029150302Non coding
13. (GCAT)11445612056163Non coding
14. (TGCA)4165831858333Non coding
15. (ATTT)3126173661747Non coding
16. (TGCA)4167032470339Non coding
17. (ATGC)7287491874945Non coding
18. (TGCA)3127587875889Coding-Non coding
19. (TGCA)3127999080001Non coding
20. (TGCA)5208853288551Non coding
21. (TGCA)1560111986112045Non coding
22. (ATGC)312116133116144Non coding
23. (TGCA)312134104134115Non coding
24. (CATG)312138421138432Non coding
25. (TGCA)312141207141218Non coding
26. (ATGC)832153130153161Non coding
27. (ATGC)312158586158597Non coding
28. (GCAT)312170145170156Non coding
29. (TGCA)312172394172405Non coding
30. (TGCA)312175663175674Non coding
31. (TGCA)312177987177998Non coding
32. (GCAT)312178297178308Non coding
33. (TGCA)312182689182700Non coding
34. (ATGC)1040182929182968Non coding
35. (TGCA)312188530188541Non coding
36. (CATC)312191460191471Non coding
37. (GCAT)520201287201306Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.