MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Citrullus lanatus (NC_014043 379236 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 71     Density of SSR      : 1SSR/ 5.34 kb   Average length of SSR  : 13.06 bp
Coding      : 3     Non-Coding           : 66   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 6 14 40 2 3 71
IMPERFECT 17 55 173 188 30 29 492
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTT)4122149821509Non coding
2. (CATT)3123486334874Coding
3. (A)14143630236315Coding
4. (AGGA)3123928239293Non coding
5. (CTT)4124060940620Non coding
6. (AATC)3124289142902Non coding
7. (TCATTC)6364422844263Coding-Non coding
8. (ATGA)3124510345114Non coding
9. (GAAA)3124921749228Non coding
10. (TTA)4125254052551Non coding
11. (CT)6126101561026Non coding
12. (GAATA)3156446564479Non coding
13. (AG)6126955669567Non coding
14. (A)12126980969820Non coding
15. (CAAA)3127301973030Non coding
16. (AAAG)3127518875199Non coding
17. (TGAA)3127589875909Non coding
18. (TAGA)3128421884229Non coding
19. (TTTC)3128628486295Non coding
20. (TTG)4129099091001Non coding
21. (TCGC)3129158191592Non coding
22. (AT)7149582295835Non coding
23. (AAGG)3129590395914Non coding
24. (GAA)412101388101399Non coding
25. (TCA)412102779102790Non coding
26. (AAG)412104515104526Non coding
27. (AAAG)312107400107411Non coding
28. (AACT)312108622108633Non coding
29. (GCT)412124081124092Non coding
30. (AAGA)312130607130618Non coding
31. (AAAG)312130653130664Non coding
32. (TTAA)312130732130743Non coding
33. (AG)714161645161658Non coding
34. (ACCA)312172709172720Non coding
35. (GCAA)312178153178164Non coding
36. (T)1313185134185146Non coding
37. (CTAGT)315187046187060Coding-Non coding
38. (AT)816190806190821Non coding
39. (A)1212191465191476Non coding
40. (GAA)412195217195228Non coding
41. (TTTC)312202394202405Non coding
42. (TTCT)312204539204550Coding
43. (TAAG)312206883206894Non coding
44. (CTAT)312209656209667Non coding
45. (TTGG)312212128212139Non coding
46. (TCTT)312225817225828Non coding
47. (TTTC)312235235235246Non coding
48. (TCAT)312239349239360Non coding
49. (AATGAG)636240195240230Non coding
50. (GATT)312241561241572Non coding
51. (GCCG)312246176246187Non coding
52. (AGA)515249017249031Non coding
53. (TCCT)312249985249996Non coding
54. (AT)612261205261216Non coding
55. (TGAA)312262101262112Non coding
56. (A)1313263972263984Non coding
57. (GTC)412266782266793Non coding
58. (ATAC)312270802270813Non coding
59. (AGAA)312282297282308Non coding
60. (AAGA)312300906300917Non coding
61. (TCAA)312302967302978Non coding
62. (TTTG)312316038316049Non coding
63. (TGCCGA)318318122318139Non coding
64. (ATGG)312329335329346Non coding
65. (T)1212329900329911Non coding
66. (CTAG)312334975334986Non coding
67. (GAT)412344625344636Non coding
68. (AAAG)312347603347614Non coding
69. (GGTC)312354681354692Non coding
70. (TTA)412364870364881Non coding
71. (TTC)412375928375939Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.