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Organism:
Citrullus lanatus
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(NC_014043 , 379236 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
71
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Density of SSR
:
1SSR/
5.34
kb
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Average length of SSR
:
13.06
bp
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Coding
:
3
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Non-Coding
:
66
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Coding and Non-Coding
:
2
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
|
6
|
6
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14
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40
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2
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3
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71
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (CATT)3 | 12 | 34863 | 34874 | Coding |
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2.
| (AGGA)3 | 12 | 39282 | 39293 | Non coding |
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3.
| (AATC)3 | 12 | 42891 | 42902 | Non coding |
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4.
| (ATGA)3 | 12 | 45103 | 45114 | Non coding |
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5.
| (GAAA)3 | 12 | 49217 | 49228 | Non coding |
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6.
| (CAAA)3 | 12 | 73019 | 73030 | Non coding |
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7.
| (AAAG)3 | 12 | 75188 | 75199 | Non coding |
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8.
| (TGAA)3 | 12 | 75898 | 75909 | Non coding |
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9.
| (TAGA)3 | 12 | 84218 | 84229 | Non coding |
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10.
| (TTTC)3 | 12 | 86284 | 86295 | Non coding |
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11.
| (TCGC)3 | 12 | 91581 | 91592 | Non coding |
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12.
| (AAGG)3 | 12 | 95903 | 95914 | Non coding |
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13.
| (AAAG)3 | 12 | 107400 | 107411 | Non coding |
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14.
| (AACT)3 | 12 | 108622 | 108633 | Non coding |
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15.
| (AAGA)3 | 12 | 130607 | 130618 | Non coding |
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16.
| (AAAG)3 | 12 | 130653 | 130664 | Non coding |
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17.
| (TTAA)3 | 12 | 130732 | 130743 | Non coding |
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18.
| (ACCA)3 | 12 | 172709 | 172720 | Non coding |
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19.
| (GCAA)3 | 12 | 178153 | 178164 | Non coding |
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20.
| (TTTC)3 | 12 | 202394 | 202405 | Non coding |
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21.
| (TTCT)3 | 12 | 204539 | 204550 | Coding |
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22.
| (TAAG)3 | 12 | 206883 | 206894 | Non coding |
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23.
| (CTAT)3 | 12 | 209656 | 209667 | Non coding |
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24.
| (TTGG)3 | 12 | 212128 | 212139 | Non coding |
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25.
| (TCTT)3 | 12 | 225817 | 225828 | Non coding |
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26.
| (TTTC)3 | 12 | 235235 | 235246 | Non coding |
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27.
| (TCAT)3 | 12 | 239349 | 239360 | Non coding |
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28.
| (GATT)3 | 12 | 241561 | 241572 | Non coding |
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29.
| (GCCG)3 | 12 | 246176 | 246187 | Non coding |
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30.
| (TCCT)3 | 12 | 249985 | 249996 | Non coding |
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31.
| (TGAA)3 | 12 | 262101 | 262112 | Non coding |
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32.
| (ATAC)3 | 12 | 270802 | 270813 | Non coding |
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33.
| (AGAA)3 | 12 | 282297 | 282308 | Non coding |
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34.
| (AAGA)3 | 12 | 300906 | 300917 | Non coding |
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35.
| (TCAA)3 | 12 | 302967 | 302978 | Non coding |
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36.
| (TTTG)3 | 12 | 316038 | 316049 | Non coding |
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37.
| (ATGG)3 | 12 | 329335 | 329346 | Non coding |
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38.
| (CTAG)3 | 12 | 334975 | 334986 | Non coding |
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39.
| (AAAG)3 | 12 | 347603 | 347614 | Non coding |
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40.
| (GGTC)3 | 12 | 354681 | 354692 | Non coding |
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Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http://
dx.doi.org/10.1016/j.mito.2014.02.002
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