MitoSatPlant: Mitochondrial Microsatellites Database of Viridiplantae
 
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       Organism: Citrullus lanatus (NC_014043 379236 bp)                                                                                                     Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 71     Density of SSR      : 1SSR/ 5.34 kb   Average length of SSR  : 13.06 bp
Coding      : 3     Non-Coding           : 66   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 6 14 40 2 3 71
IMPERFECT 17 55 173 188 30 29 492
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CATT)3123486334874Coding
2. (AGGA)3123928239293Non coding
3. (AATC)3124289142902Non coding
4. (ATGA)3124510345114Non coding
5. (GAAA)3124921749228Non coding
6. (CAAA)3127301973030Non coding
7. (AAAG)3127518875199Non coding
8. (TGAA)3127589875909Non coding
9. (TAGA)3128421884229Non coding
10. (TTTC)3128628486295Non coding
11. (TCGC)3129158191592Non coding
12. (AAGG)3129590395914Non coding
13. (AAAG)312107400107411Non coding
14. (AACT)312108622108633Non coding
15. (AAGA)312130607130618Non coding
16. (AAAG)312130653130664Non coding
17. (TTAA)312130732130743Non coding
18. (ACCA)312172709172720Non coding
19. (GCAA)312178153178164Non coding
20. (TTTC)312202394202405Non coding
21. (TTCT)312204539204550Coding
22. (TAAG)312206883206894Non coding
23. (CTAT)312209656209667Non coding
24. (TTGG)312212128212139Non coding
25. (TCTT)312225817225828Non coding
26. (TTTC)312235235235246Non coding
27. (TCAT)312239349239360Non coding
28. (GATT)312241561241572Non coding
29. (GCCG)312246176246187Non coding
30. (TCCT)312249985249996Non coding
31. (TGAA)312262101262112Non coding
32. (ATAC)312270802270813Non coding
33. (AGAA)312282297282308Non coding
34. (AAGA)312300906300917Non coding
35. (TCAA)312302967302978Non coding
36. (TTTG)312316038316049Non coding
37. (ATGG)312329335329346Non coding
38. (CTAG)312334975334986Non coding
39. (AAAG)312347603347614Non coding
40. (GGTC)312354681354692Non coding
Kumar M, Kapil A, Shanker A (2014). Mitochondrion, http:// dx.doi.org/10.1016/j.mito.2014.02.002                                                                                         Site best viewed at 1280x768.